AT3G12190.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.991 What is SUBAcon? |
|
||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||
| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: Frigida-like protein (TAIR:AT5G27220.1); Has 43637 Blast hits to 24906 proteins in 1566 species: Archae - 743; Bacteria - 4122; Metazoa - 22377; Fungi - 2585; Plants - 1803; Viruses - 158; Other Eukaryotes - 11849 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:3886183..3886992 | ||||||||||||||||||||
| Molecular Weight (calculated) | 32634.40 Da | ||||||||||||||||||||
| IEP (calculated) | 10.32 | ||||||||||||||||||||
| GRAVY (calculated) | -1.34 | ||||||||||||||||||||
| Length | 269 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVKKLRVAK WKKERLRRSL MKAESKASDV LSFTLSWRDL ESHFDSIESD LVKRSQEIES KEKHLEKRSH ELESKGKILE KRAREINTAD GFRRDFEEKQ 101: RKLDRLKREI ESEEKKRFLV QKLNRERKFE LKRTREQVEA LQKNDMKLDV KHSKEMSEEL LVQQEKYEEI LKKKKLEEKK LKDCTRDLAL REGDLRWVSM 201: RMTKRCEELR WEKKKNLVLC KRNEEAERKL KHLNRALEEK QKEVDLIEKR LGEWRDVKGR GNGDTSGDE |
||||||||||||||||||||
| See Also |
|
||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)