AT3G12100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.780 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cation efflux family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 6181 Blast hits to 5813 proteins in 1885 species: Archae - 127; Bacteria - 3950; Metazoa - 1047; Fungi - 487; Plants - 277; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3854741..3857270 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43817.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.18 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.16 | ||||||||||||||||||||||||||||||||||||
| Length | 393 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERSISFNPR GDNELPDDRS SDVGYAANDR RLAYSRSFQQ SHGPRTPAVT EAAKPFLDRT VSSIDMPPDI YSVDGSDVFF GEGKDVDMAK VSVLEMVWEV 101: FGVVTSGNRQ MKRLFLLIAL NVLYSTTELS IGIFTGRVGL VSDAFHLTFG CGLLTFSLFA MATSRKKPDH AYSYGYKRLE VLSAFTNALF LMFMSFSLAV 201: EALHAFIQDE SEHKHYLIVS AVTNLLVNLL GVWFFRNYAR VNIAYRKAED MNYHSVCLHV ISDSIRSAGL ILASWLLSLG VENAEVLCLG LVSVTVFMLV 301: MPLFKATGGV LLQMAPPNIP SSALSKCLRQ ITSREDVTEV LQARFWEVVP GHTVGSLRLQ VKSGIDERPL LQYVYDVYHD LGVQDLTLQT DYT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)