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AT3G12090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.961
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tetraspanin6
Curator
Summary (TAIR10)
Member of TETRASPANIN family
Computational
Description (TAIR10)
tetraspanin6 (TET6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: tetraspanin5 (TAIR:AT4G23410.1); Has 433 Blast hits to 431 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 429; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:5717eggNOG:ENOG410IF3XeggNOG:ENOG410YEBVEMBL:AC069473EMBL:AP002063EMBL:AY088667EMBL:AY090367
EMBL:CP002686EnsemblPlants:AT3G12090EnsemblPlants:AT3G12090.1entrez:820383GeneID:820383Genevisible:Q9C7C1GO:GO:0016021
GO:GO:0035265hmmpanther:PTHR32191hmmpanther:PTHR32191:SF1HOGENOM:HOG000238911InParanoid:Q9C7C1InterPro:IPR018499KEGG:ath:AT3G12090
OMA:IGCCAFQPaxDb:Q9C7C1Pfam:PF00335Pfam:Q9C7C1PhylomeDB:Q9C7C1PRO:PR:Q9C7C1Proteomes:UP000006548
RefSeq:NP_566411.2STRING:3702.AT3G12090.1TAIR:AT3G12090tair10-symbols:TET6TMHMM:TMhelixUniGene:At.39647UniProt:Q9C7C1
Coordinates (TAIR10) chr3:-:3852326..3853714
Molecular Weight (calculated) 32257.30 Da
IEP (calculated) 7.96
GRAVY (calculated) 0.19
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MYRFSNTVIG VLNLLTLLAS IPIIGTALYK ARSSTTCENF LQTPLLVIGF IILIVSLAGF IGACFNVAWA LWVYLVVMIF LIATLMGLTL FGLVVTSQGG
101: GVEVPGRIYK EYRLGDYHPW LRERVRDPEY WNSIRSCILS SKTCTKIESW TTLDYFQRDM TSVQSGCCKP PTACTYEAGV VDGGGDCFRW NNGVEMLCYE
201: CDACKAGVLE EIRLDWRKLS VVNILVLVLL IAVYAAGCCA FHNTRHAAHP YHPSDDNRMT RVRPRWDYYW WRWWHEKKEQ LY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)