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AT3G12070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB geranylgeranyl transferase beta subunit 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB geranylgeranyl transferase beta subunit 2 (RGTB2); FUNCTIONS IN: catalytic activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 1 (TAIR:AT5G12210.1); Has 1529 Blast hits to 1352 proteins in 256 species: Archae - 0; Bacteria - 31; Metazoa - 548; Fungi - 456; Plants - 198; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G12070-MONOMERBioCyc:ARA:GQT-673-MONOMEReggNOG:COG5029eggNOG:KOG0366EMBL:AC069473EMBL:AP002040EMBL:AP002063
EMBL:BT028896EMBL:CP002686EnsemblPlants:AT3G12070EnsemblPlants:AT3G12070.1EnsemblPlants:AT3G12070.2entrez:820381Gene3D:1.50.10.20
GeneID:820381GO:GO:0004663GO:GO:0005829GO:GO:0005968GO:GO:0018344Gramene:AT3G12070.1Gramene:AT3G12070.2
hmmpanther:PTHR11774hmmpanther:PTHR11774:SF11InterPro:IPR001330InterPro:IPR008930InterPro:IPR026873KEGG:ath:AT3G12070KO:K05956
OMA:ERQDYESPANTHER:PTHR11774:SF11Pfam:PF00432PhylomeDB:Q9LHL5Proteomes:UP000006548RefSeq:NP_187814.1RefSeq:NP_850567.1
SMR:Q9LHL5STRING:3702.AT3G12070.1SUPFAM:SSF48239TAIR:AT3G12070tair10-symbols:AtRGTB2tair10-symbols:RGTB2UniGene:At.39649
UniProt:Q9LHL5
Coordinates (TAIR10) chr3:-:3845420..3847140
Molecular Weight (calculated) 35194.40 Da
IEP (calculated) 5.56
GRAVY (calculated) 0.08
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MADKLVAGKH LRYILNLMAE KKKESFESVV MDHLRMNGAY WGLTTLALLD KLGSVSEDEV VSWVMTCQHE SGGFAGNTGH DPHVLYTLSA VQILALFDKL
101: NILDVEKVSN YIAGLQNEDG SFSGDIWGEV DTRFSYIAIC CLSILKCLDK INVKKAVDYI VSCKNLDGGF GCSPGAESHA GQIFCCVGAL AITGNLHRVD
201: KDLLGWWLCE RQDYESGGLN GRPEKLPDVC YSWWVLSSLI MIDRVHWIEK AKLVKFILDS QDMDNGGISD RPSYTVDIFH TYFGVAGLSL LEYPGVKTID
301: PAYALPVHVI NRILFTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)