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AT3G12030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.671
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function DUF106, transmembrane
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF106, transmembrane (InterPro:IPR002809), Uncharacterised conserved protein UCP023322, transmembrane eukaryotic (InterPro:IPR008559); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF106, transmembrane (TAIR:AT5G06660.1); Has 261 Blast hits to 261 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR8BeggNOG:KOG3312EMBL:AC069473EMBL:AK118289EMBL:AP002040EMBL:BT005514EMBL:CP002686
EnsemblPlants:AT3G12030EnsemblPlants:AT3G12030.1entrez:820377GeneID:820377GO:GO:0005794GO:GO:0016021Gramene:AT3G12030.1
hmmpanther:PTHR20917IntAct:Q9LHL8InterPro:IPR002809InterPro:IPR008559KEGG:ath:AT3G12030ncoils:CoilOMA:ETMKTEN
PANTHER:PTHR20917Pfam:PF01956PhylomeDB:Q9LHL8PIRSF:PIRSF023322Proteomes:UP000006548RefSeq:NP_566409.1SMART:SM01415
STRING:3702.AT3G12030.1TAIR:AT3G12030TMHMM:TMhelixUniGene:At.64995UniProt:Q9LHL8
Coordinates (TAIR10) chr3:-:3834465..3835055
Molecular Weight (calculated) 21533.60 Da
IEP (calculated) 10.41
GRAVY (calculated) 0.13
Length 196 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTIPLFAS FKYADSLTVV GISFCTALVC EAISWILIYR TSSYKSLKYS IDKATKKLET MKTENPSSKL SIKKSKTKKI DRVETSLKES SRDLSLFKFK
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVKKMS HRGLKGDDPT DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)