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AT3G11980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Jojoba acyl CoA reductase-related male sterility protein
Curator
Summary (TAIR10)
Similar to fatty acid reductases.
Computational
Description (TAIR10)
MALE STERILITY 2 (MS2); FUNCTIONS IN: fatty-acyl-CoA reductase (alcohol-forming) activity, oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor; INVOLVED IN: microsporogenesis, pollen exine formation; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding domain (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: fatty acid reductase 6 (TAIR:AT3G56700.1); Has 2390 Blast hits to 2358 proteins in 427 species: Archae - 4; Bacteria - 606; Metazoa - 985; Fungi - 290; Plants - 282; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G11980-MONOMERBRENDA:1.2.1.42BRENDA:1.2.1.50EC:1.2.1.n2eggNOG:ENOG410XS7ReggNOG:KOG1221EMBL:AC069473
EMBL:AP002040EMBL:CP002686EMBL:EU280150EMBL:X73652EnsemblPlants:AT3G11980EnsemblPlants:AT3G11980.1entrez:820372
Gene3D:3.40.50.720GeneID:820372Genevisible:Q08891GO:GO:0006629GO:GO:0010584GO:GO:0016628GO:GO:0080019
Gramene:AT3G11980.1gramene_pathway:1.2.1.-gramene_pathway:PWY-282hmmpanther:PTHR11011hmmpanther:PTHR11011:SF25HOGENOM:HOG000242967InterPro:IPR013120
InterPro:IPR016040InterPro:IPR026055KEGG:ath:AT3G11980KO:K13356OMA:FPGWIDGPANTHER:PTHR11011PaxDb:Q08891
Pfam:PF03015Pfam:PF07993Pfam:Q08891PhylomeDB:Q08891PIR:S33804PRIDE:Q08891PRO:PR:Q08891
ProteinModelPortal:Q08891Proteomes:UP000006548Reactome:R-ATH-75896RefSeq:NP_187805.1SMR:Q08891STRING:3702.AT3G11980.1SUPFAM:SSF51735
TAIR:AT3G11980tair10-symbols:FAR2tair10-symbols:MS2UniGene:At.5397UniProt:Q08891
Coordinates (TAIR10) chr3:+:3814484..3816927
Molecular Weight (calculated) 68419.90 Da
IEP (calculated) 8.51
GRAVY (calculated) -0.25
Length 616 amino acids
Sequence (TAIR10)
(BLAST)
001: MEALFLSSSS SSIVASNKLT RLHNHCVWST VIRDKKRFGP TWCRVGGGGD GGRNSNAERP IRVSSLLKDR GQVLIREQSS PAMDAETLVL SPNGNGRTIE
101: INGVKTLMPF SGASMVGMKE GLGIISFLQG KKFLITGSTG FLAKVLIEKV LRMAPDVSKI YLLIKAKSKE AAIERLKNEV LDAELFNTLK ETHGASYMSF
201: MLTKLIPVTG NICDSNIGLQ ADSAEEIAKE VDVIINSAAN TTFNERYDVA LDINTRGPGN LMGFAKKCKK LKLFLQVSTA YVNGQRQGRI MEKPFSMGDC
301: IATENFLEGN RKALDVDREM KLALEAARKG TQNQDEAQKM KDLGLERARS YGWQDTYVFT KAMGEMMINS TRGDVPVVII RPSVIESTYK DPFPGWMEGN
401: RMMDPIVLCY GKGQLTGFLV DPKGVLDVVP ADMVVNATLA AIAKHGMAMS DPEPEINVYQ IASSAINPLV FEDLAELLYN HYKTSPCMDS KGDPIMVRLM
501: KLFNSVDDFS DHLWRDAQER SGLMSGMSSV DSKMMQKLKF ICKKSVEQAK HLATIYEPYT FYGGRFDNSN TQRLMENMSE DEKREFGFDV GSINWTDYIT
601: NVHIPGLRRH VLKGRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)