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AT3G11964.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:15496452 (2005): nucleus
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA binding;RNA binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA binding;RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: mRNA processing, RNA processing; LOCATED IN: nucleolus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), RNA-processing protein, HAT helix (InterPro:IPR003107), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G51110.1); Has 43836 Blast hits to 19683 proteins in 2824 species: Archae - 141; Bacteria - 33398; Metazoa - 1103; Fungi - 905; Plants - 756; Viruses - 0; Other Eukaryotes - 7533 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0539eggNOG:KOG1070EMBL:AC016795EMBL:AC069473
EMBL:AP002040EMBL:CP002686EnsemblPlants:AT3G11964EnsemblPlants:AT3G11964.1
entrez:820370Gene3D:1.25.40.10Gene3D:2.40.50.140GeneID:820370
GO:GO:0003723GO:GO:0005730GO:GO:0005886GO:GO:0006364
GO:GO:0006397GO:GO:0009553GO:GO:0032040Gramene:AT3G11964.1
hmmpanther:PTHR23270hmmpanther:PTHR23270:SF10InParanoid:F4J8K6InterPro:IPR003029
InterPro:IPR003107InterPro:IPR008847InterPro:IPR011990InterPro:IPR012340
InterPro:IPR022967iPTMnet:F4J8K6KEGG:ath:AT3G11964KO:K14792
ncoils:CoilOMA:LCHRSEMPaxDb:F4J8K6Pfam:PF00575
Pfam:PF05843Pfscan:PS50126PRIDE:F4J8K6PRO:PR:F4J8K6
PROSITE:PS50126ProteinModelPortal:F4J8K6Proteomes:UP000006548RefSeq:NP_187803.4
SMART:SM00316SMART:SM00386STRING:3702.AT3G11964.1SUPFAM:SSF48452
SUPFAM:SSF50249TAIR:AT3G11964UniGene:At.50175UniProt:F4J8K6
Coordinates (TAIR10) chr3:-:3793957..3806626
Molecular Weight (calculated) 211617.00 Da
IEP (calculated) 8.38
GRAVY (calculated) -0.32
Length 1896 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVVPQKKFAN GKRNDSTKSF KPMKKPFKKT KDDVAARSEA MALQLEDVPD FPRGGGTSLS KKEREKLYEE VDAEFDADER VSKKSKGGKS KKRIPSDLDD
0101: LGLLFGGGLH GKRPRYANKI TTKNISPGMK LLGVVTEVNQ KDIVISLPGG LRGLVRASEV SDFTDRGIED DENELLGDIF SVGQLVPCIV LELDDDKKEA
0201: GKRKIWLSLR LSLLHKGFSF DSFQLGMVFS ANVKSIEDHG SILHFGLPSI TGFIEISDDG NQESGMKTGQ LIQGVVTKID RDRKIVHLSS DPDSVAKCLT
0301: KDLSGMSFDL LIPGMMVNAR VQSVLENGIL FDFLTYFNGT VDLFHLKNPL SNKSWKDEYN QNKTVNARIL FIDPSSRAVG LTLSPHVVCN KAPPLHVFSG
0401: DIFDEAKVVR IDKSGLLLEL PSKPTPTPAY VSFKEGNHIR VRVLGLKQME GLAVGTLKES AFEGPVFTHS DVKPGMVTKA KVISVDTFGA IVQFSGGLKA
0501: MCPLRHMSEF EVTKPRKKFK VGAELVFRVL GCKSKRITVT YKKTLVKSKL PILSSYTDAT EGLVTHGWIT KIEKHGCFVR FYNGVQGFVP RFELGLEPGS
0601: DPDSVFHVGE VVKCRVTSAV HGTQRITLND SIKLGSIVSG IIDTITSQAV IVRVKSKSVV KGTISAEHLA DHHEQAKLIM SLLRPGYELD KLLVLDIEGN
0701: NMALSSKYSL IKLAEELPSD FNQLQPNSVV HGYVCNLIEN GCFVRFLGRL TGFAPRSKAI DDPKADVSES FFVGQSVRAN IVDVNQEKSR ITLSLKQSSC
0801: ASVDASFVQE YFLMDEKISD LQSSDITKSD CSWVEKFSIG SLIKGTIQEQ NDLGVVVNFD NINNVLGFIP QHHMGGATLV PGSVVNAVVL DISRAERLVD
0901: LSLRPELLNN LTKEVSNSSK KKRKRGISKE LEVHQRVSAV VEIVKEQHLV LSIPEHGYTI GYASVSDYNT QKLPVKQFST GQSVVASVKA VQNPLTSGRL
1001: LLLLDSVSGT SETSRSKRAK KKSSCEVGSV VHAEITEIKP FELRVNFGNS FRGRIHITEV LVNDASTSDE PFAKFRVGQS ISARVVAKPC HTDIKKTQLW
1101: ELSVKPAMLK DSSEFNDTQE SEQLEFAAGQ CVIGYVYKVD KEWVWLAVSR NVTARIFILD TSCKAHELEE FERRFPIGKA VSGYVLTYNK EKKTLRLVQR
1201: PLLFIHKSIA NGGGSKTDKP DSSIPGDDDT LFIHEGDILG GRISKILPGV GGLRVQLGPY VFGRVHFTEI NDSWVPDPLD GFREGQFVKC KVLEISSSSK
1301: GTWQIELSLR TSLDGMSSAD HLSEDLKNND NVCKRFERIE DLSPDMGVQG YVKNTMSKGC FIILSRTVEA KVRLSNLCDT FVKEPEKEFP VGKLVTGRVL
1401: NVEPLSKRIE VTLKTVNAGG RPKSESYDLK KLHVGDMISG RIRRVEPFGL FIDIDQTGMV GLCHISQLSD DRMENVQARY KAGESVRAKI LKLDEEKKRI
1501: SLGMKSSYLM NGDDDKAQPL SEDNTSMECD PINDPKSEVL AAVDDFGFQE TSGGTSLVLA QVESRASIPP LEVDLDDIEE TDFDSSQNQE KLLGANKDEK
1601: SKRREKQKDK EEREKKIQAA EGRLLEHHAP ENADEFEKLV RSSPNSSFVW IKYMAFMLSL ADIEKARSIA ERALRTINIR EEEEKLNIWV AYFNLENEHG
1701: NPPEESVKKV FERARQYCDP KKVYLALLGV YERTEQYKLA DKLLDEMIKK FKQSCKIWLR KIQSSLKQNE EAIQSVVNRA LLCLPRHKHI KFISQTAILE
1801: FKCGVADRGR SLFEGVLREY PKRTDLWSVY LDQEIRLGED DVIRSLFERA ISLSLPPKKM KFLFKKFLEY EKSVGDEERV EYVKQRAMEY ANSTLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)