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AT3G11945.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homogentisate prenyltransferase
Curator
Summary (TAIR10)
Encodes a protein involved in plastoquinone-9 biosynthesis. The enzyme possesses homogentisate prenyltransferase activity and was shown to use solanesyl diphosphate, farnesyl diphosphate and geranylgeranyldiphosphate as prenyl donors, but not phytyldiphosphate. This gene At3g11945 derives from a split of At3g11950, publications Tian et al (2007) and Sadre et al (2006) refer to this gene as At3g11950.
Computational
Description (TAIR10)
homogentisate prenyltransferase (HST); FUNCTIONS IN: homogentisate geranylgeranyltransferase activity, homogentisate farnesyltransferase activity, dimethylallyltranstransferase activity, homogentisate solanesyltransferase activity; INVOLVED IN: carotenoid biosynthetic process, plastoquinone biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537); BEST Arabidopsis thaliana protein match is: homogentisate phytyltransferase 1 (TAIR:AT2G18950.1); Has 1360 Blast hits to 1357 proteins in 372 species: Archae - 250; Bacteria - 602; Metazoa - 1; Fungi - 4; Plants - 187; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2684-MONOMERBRENDA:2.5.1.115BRENDA:2.5.1.117EC:2.5.1.117EMBL:AP002040EMBL:CP002686EMBL:DQ231060
EnsemblPlants:AT3G11945EnsemblPlants:AT3G11945.1entrez:5007993ExpressionAtlas:Q1ACB3GeneID:5007993Genevisible:Q1ACB3GO:GO:0004659
GO:GO:0016021GO:GO:0031969gramene_pathway:PWY-1581hmmpanther:PTHR11048hmmpanther:PTHR11048:SF24HOGENOM:HOG000264578InParanoid:Q1ACB3
InterPro:IPR000537KEGG:ath:AT3G11945KO:K12501Pfam:PF01040Pfam:Q1ACB3PhylomeDB:Q1ACB3PRIDE:Q1ACB3
PRO:PR:Q1ACB3ProteinModelPortal:Q1ACB3Proteomes:UP000006548RefSeq:NP_001078138.1SwissPalm:Q1ACB3TAIR:AT3G11945tair10-symbols:ATHST
tair10-symbols:HSTtair10-symbols:PDS2TMHMM:TMhelixUniGene:At.71046UniProt:Q1ACB3
Coordinates (TAIR10) chr3:-:3780041..3782880
Molecular Weight (calculated) 42843.00 Da
IEP (calculated) 10.61
GRAVY (calculated) 0.54
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MELSISQSPR VRFSSLAPRF LAASHHHRPS VHLAGKFISL PRDVRFTSLS TSRMRSKFVS TNYRKISIRA CSQVGAAESD DPVLDRIARF QNACWRFLRP
101: HTIRGTALGS TALVTRALIE NTHLIKWSLV LKALSGLLAL ICGNGYIVGI NQIYDIGIDK VNKPYLPIAA GDLSVQSAWL LVIFFAIAGL LVVGFNFGPF
201: ITSLYSLGLF LGTIYSVPPL RMKRFPVAAF LIIATVRGFL LNFGVYHATR AALGLPFQWS APVAFITSFV TLFALVIAIT KDLPDVEGDR KFQISTLATK
301: LGVRNIAFLG SGLLLVNYVS AISLAFYMPQ VFRGSLMIPA HVILASGLIF QTWVLEKANY TKEAISGYYR FIWNLFYAEY LLFPFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)