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AT3G11850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF593
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF593; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT5G06560.1); Has 665 Blast hits to 623 proteins in 106 species: Archae - 4; Bacteria - 38; Metazoa - 138; Fungi - 31; Plants - 334; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEZJeggNOG:ENOG410Y9EYEMBL:AC016795EMBL:AY099765EMBL:AY128893EMBL:CP002686EnsemblPlants:AT3G11850
EnsemblPlants:AT3G11850.1EnsemblPlants:AT3G11850.2entrez:820358GeneID:820358Gramene:AT3G11850.1Gramene:AT3G11850.2hmmpanther:PTHR31422
hmmpanther:PTHR31422:SF0HOGENOM:HOG000240280IntAct:Q9SF14InterPro:IPR007656KEGG:ath:AT3G11850ncoils:CoilOMA:KWRCLRS
Pfam:PF04576PhylomeDB:Q9SF14Proteomes:UP000006548RefSeq:NP_187791.1RefSeq:NP_974289.1TAIR:AT3G11850UniGene:At.39680
UniProt:Q9SF14
Coordinates (TAIR10) chr3:-:3739222..3741101
Molecular Weight (calculated) 57776.00 Da
IEP (calculated) 5.82
GRAVY (calculated) -0.80
Length 504 amino acids
Sequence (TAIR10)
(BLAST)
001: MESPIKCCDC GCDCCSSSPG SWIRSVKKRR HDELQTEKRF SIPELDDLDM FSNPRVQIEN ECELLRETVS NQQQTIQDLY HELEQERIAS STAADETVKM
101: IQTLEREKAK IDLELKQLQR SVDETLNYEN QEIEALENMV YQRDQTIQAL TFETQAYKHR MMSFGLTEAE ADGERSLLSR NPSMIDFSSE YDCPTQDYPP
201: LKCNINENQD PLEADIYVAD DENYPPADSP HGRVHLKTLD RRLSQMETNP SFTQLNRGRD VSEKGMVGES PRRQRHFRRI SPTGSSSSHL GASKELRPDV
301: FVDSPRSQSY SSKKMEDVSY TENNNAKDDL SEIGDDMSDR VYTIDSVHHS SVAHSGGVAE QKIEDGASDG NVVFPREHTD LGDPDITKLY MRLQALEADR
401: ESMKHALLSM RTEKAQMVLL KEIAQHLSKE VVPQRRLPLR KASIAGPLTF TPVFKWITSF VSWKRKARRS KYMYGMSGNN IGLQMLLEKV PRSRKWRCLR
501: STQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)