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AT3G11840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.926
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant U-box 24
Curator
Summary (TAIR10)
Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity.
Computational
Description (TAIR10)
plant U-box 24 (PUB24); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: respiratory burst involved in defense response, protein autoubiquitination, response to chitin, defense response; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 23 (TAIR:AT2G35930.1); Has 2348 Blast hits to 2308 proteins in 197 species: Archae - 0; Bacteria - 24; Metazoa - 273; Fungi - 129; Plants - 1697; Viruses - 3; Other Eukaryotes - 222 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-797-MONOMEREC:6.3.2.-eggNOG:ENOG410IJFZeggNOG:ENOG410Y8GWEMBL:AC016795EMBL:AK228955EMBL:AK317081
EMBL:AY084238EMBL:CP002686EnsemblPlants:AT3G11840EnsemblPlants:AT3G11840.1entrez:820357Gene3D:1.25.10.10Gene3D:3.30.40.10
GeneID:820357Genevisible:Q9SF15GO:GO:0004842GO:GO:0006952GO:GO:0016874Gramene:AT3G11840.1hmmpanther:PTHR22849
hmmpanther:PTHR22849:SF24HOGENOM:HOG000238505InParanoid:Q9SF15InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024
KEGG:ath:AT3G11840PaxDb:Q9SF15Pfam:PF04564Pfam:Q9SF15Pfscan:PS51698PhylomeDB:Q9SF15PRIDE:Q9SF15
PRO:PR:Q9SF15PROSITE:PS51698ProteinModelPortal:Q9SF15Proteomes:UP000006548RefSeq:NP_566402.1SMART:SM00504SMR:Q9SF15
STRING:3702.AT3G11840.1SUPFAM:SSF48371SUPFAM:SSF57850TAIR:AT3G11840tair10-symbols:PUB24UniGene:At.39684UniPathway:UPA00143
UniProt:Q9SF15
Coordinates (TAIR10) chr3:-:3736578..3738250
Molecular Weight (calculated) 53026.90 Da
IEP (calculated) 7.18
GRAVY (calculated) -0.12
Length 470 amino acids
Sequence (TAIR10)
(BLAST)
001: MNIYTYTKSY VFPQMDQEEE EIEIPNYFIC PISLEIMKDP VTTVSGITYD RQNIVKWLEK VPSCPVTKQP LPLDSDLTPN HMLRRLIQHW CVENETRGVV
101: RISTPRVPPG KLNVVEEIKN LKKFGQEALG REETLQKLEV LAMDGNNRRL MCECGVHKSL ILFVVKCTSE DEDGRRRIKG LDESLRLLHL IGIPSNDAKT
201: ILMENDRVME SLTWVLHQED FLSKAYTIVL LRNLTEYTSS HIVERLNPEI FKGIIGFLKD VVNSVNRTSP TVRETVQSSS RPSLGKTEPS KLDHSLVIKQ
301: AVTAALMILL ETSSWSRNRS LLVDLGAVSE LIELEISYTG EKRITELMLG VLSRLCCCAN GRAEILAHRG GIAVVTKRLL RVSPAADDRA ISILTTVSKF
401: SPENMVVEEM VNVGTVEKLC SVLGMDCGLN LKEKAKEILK DHFDEWKKFP CIDITLLTKL LSISPKGPKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)