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AT3G11830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TCP-1/cpn60 chaperonin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, eta subunit (InterPro:IPR012720), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: T-complex protein 1 alpha subunit (TAIR:AT3G20050.1); Has 19825 Blast hits to 19758 proteins in 3880 species: Archae - 808; Bacteria - 8913; Metazoa - 2158; Fungi - 1512; Plants - 862; Viruses - 0; Other Eukaryotes - 5572 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0459eggNOG:KOG0361EMBL:AC016795EMBL:AY070472EMBL:AY102137EMBL:CP002686EnsemblPlants:AT3G11830
EnsemblPlants:AT3G11830.1EnsemblPlants:AT3G11830.2entrez:820356ExpressionAtlas:Q9SF16Gene3D:1.10.560.10Gene3D:3.30.260.10Gene3D:3.50.7.10
GeneID:820356Genevisible:Q9SF16GO:GO:0005524GO:GO:0005829GO:GO:0006457GO:GO:0046686hmmpanther:PTHR11353
hmmpanther:PTHR11353:SF22HOGENOM:HOG000226730InParanoid:Q9SF16IntAct:Q9SF16InterPro:IPR002194InterPro:IPR002423InterPro:IPR012720
InterPro:IPR017998InterPro:IPR027409InterPro:IPR027410InterPro:IPR027413KEGG:ath:AT3G11830KO:K09499OMA:FEQCVWE
PANTHER:PTHR11353:SF22PaxDb:Q9SF16Pfam:PF00118Pfam:Q9SF16PhylomeDB:Q9SF16PRIDE:Q9SF16PRINTS:PR00304
PRO:PR:Q9SF16PROSITE:PS00750PROSITE:PS00751PROSITE:PS00995ProteinModelPortal:Q9SF16Proteomes:UP000006548Reactome:R-ATH-390471
RefSeq:NP_001189863.1RefSeq:NP_187789.1scanprosite:PS00750scanprosite:PS00751scanprosite:PS00995SMR:Q9SF16STRING:3702.AT3G11830.1
SUPFAM:SSF48592SUPFAM:SSF52029SUPFAM:SSF54849TAIR:AT3G11830TIGRfam:TIGR02345TIGRFAMs:TIGR02345UniGene:At.23522
UniGene:At.39684UniProt:Q9SF16
Coordinates (TAIR10) chr3:+:3732734..3736156
Molecular Weight (calculated) 59779.80 Da
IEP (calculated) 6.30
GRAVY (calculated) -0.09
Length 557 amino acids
Sequence (TAIR10)
(BLAST)
001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)