suba logo
AT3G11820.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15060130 (2004): plasma membrane
  • PMID:14517339 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : syntaxin of plants 121
Curator
Summary (TAIR10)
Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.
Computational
Description (TAIR10)
syntaxin of plants 121 (SYP121); FUNCTIONS IN: protein anchor, SNAP receptor activity; INVOLVED IN: in 13 processes; LOCATED IN: SNARE complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 124 (TAIR:AT1G61290.1); Has 2385 Blast hits to 2376 proteins in 301 species: Archae - 0; Bacteria - 6; Metazoa - 1106; Fungi - 480; Plants - 466; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
Protein Annotations
BioGrid:5689DIP:DIP-59829NeggNOG:COG5074eggNOG:KOG0810EMBL:AC016795EMBL:AF112864EMBL:AY087842
EMBL:AY093151EMBL:BT003393EMBL:CP002686EnsemblPlants:AT3G11820EnsemblPlants:AT3G11820.1EnsemblPlants:AT3G11820.2entrez:820355
ExpressionAtlas:Q9ZSD4GeneID:820355Genevisible:Q9ZSD4GO:GO:0000149GO:GO:0005802GO:GO:0005886GO:GO:0006612
GO:GO:0006887GO:GO:0006906GO:GO:0006952GO:GO:0009504GO:GO:0009506GO:GO:0009620GO:GO:0009737
GO:GO:0010119GO:GO:0010148GO:GO:0016021GO:GO:0016192GO:GO:0031201GO:GO:0031348GO:GO:0043495
GO:GO:0048278GO:GO:0050832GO:GO:0072660GO:GO:0072661hmmpanther:PTHR19957hmmpanther:PTHR19957:SF69HOGENOM:HOG000238904
InParanoid:Q9ZSD4IntAct:Q9ZSD4InterPro:IPR000727InterPro:IPR006011InterPro:IPR006012InterPro:IPR010989iPTMnet:Q9ZSD4
KEGG:ath:AT3G11820KO:K08486ncoils:CoilOMA:SCHEQSKPaxDb:Q9ZSD4Pfam:PF00804Pfam:PF05739
Pfam:Q9ZSD4Pfscan:PS50192PhylomeDB:Q9ZSD4PRIDE:Q9ZSD4PRO:PR:Q9ZSD4PROSITE:PS00914PROSITE:PS50192
ProteinModelPortal:Q9ZSD4Proteomes:UP000006548RefSeq:NP_187788.1RefSeq:NP_974288.1scanprosite:PS00914SMART:SM00397SMART:SM00503
SMR:Q9ZSD4STRING:3702.AT3G11820.1SUPFAM:SSF47661SwissPalm:Q9ZSD4TAIR:AT3G11820tair10-symbols:AT-SYR1tair10-symbols:ATSYP121
tair10-symbols:ATSYR1tair10-symbols:PEN1tair10-symbols:SYP121tair10-symbols:SYR1TMHMM:TMhelixUniGene:At.11000UniGene:At.70633
UniProt:Q9ZSD4
Coordinates (TAIR10) chr3:-:3729540..3730868
Molecular Weight (calculated) 37959.10 Da
IEP (calculated) 9.45
GRAVY (calculated) -0.57
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)