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AT3G11780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT5G06480.1); Has 235 Blast hits to 235 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 114; Plants - 95; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
EMBL:AC016795EMBL:AY034906EMBL:BT004335EMBL:CP002686
EnsemblPlants:AT3G11780EnsemblPlants:AT3G11780.1entrez:820352ExpressionAtlas:Q9SF20
GeneID:820352Gramene:AT3G11780.1hmmpanther:PTHR11306hmmpanther:PTHR11306:SF12
InterPro:IPR003172InterPro:IPR014756Pfam:PF02221PhylomeDB:Q9SF20
Proteomes:UP000006548RefSeq:NP_566400.1SMART:SM00737SUPFAM:SSF81296
TAIR:AT3G11780UniGene:At.20432UniProt:Q9SF20
Coordinates (TAIR10) chr3:-:3724326..3725476
Molecular Weight (calculated) 16805.90 Da
IEP (calculated) 4.73
GRAVY (calculated) 0.03
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKFTGFSSL AISYFLLVST IVAATDVHYC DNNEEYEVKV QGVDITPYPI ARGEPATFRI SANTDTEISS GKLVIEVSYF GWHIHSETHD LCDETSCPVA
101: IGDFLVAHSQ VLPGYTPPGS YSLKMKMLDG RKKELTCIKF SFDIGFGSSV ADM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)