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AT3G11730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ras-related small GTP-binding family protein
Curator
Summary (TAIR10)
Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. It has also been identified as an isoprenylated protein.
Computational
Description (TAIR10)
ATFP8; FUNCTIONS IN: GTP binding, myosin XI tail binding, GTP-dependent protein binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1A (TAIR:AT5G47200.1); Has 29795 Blast hits to 29734 proteins in 779 species: Archae - 25; Bacteria - 142; Metazoa - 15645; Fungi - 4180; Plants - 3599; Viruses - 20; Other Eukaryotes - 6184 (source: NCBI BLink).
Protein Annotations
BioGrid:5679eggNOG:ENOG410XQN5eggNOG:KOG0084EMBL:AC016795
EMBL:AK118150EMBL:BT005576EMBL:CP002686EMBL:U64911
EnsemblPlants:AT3G11730EnsemblPlants:AT3G11730.1entrez:820345Gene3D:3.40.50.300
GeneID:820345Genevisible:Q9ZRE2GO:GO:0000139GO:GO:0005525
GO:GO:0005886GO:GO:0006888GO:GO:0007264GO:GO:0015031
GO:GO:0030742GO:GO:0032588GO:GO:0080115Gramene:AT3G11730.1
hmmpanther:PTHR24073hmmpanther:PTHR24073:SF490HOGENOM:HOG000233968InParanoid:Q9ZRE2
IntAct:Q9ZRE2InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417
KEGG:ath:AT3G11730KO:K07874OMA:KSRCCSTPaxDb:Q9ZRE2
Pfam:PF00071Pfam:Q9ZRE2Pfscan:PS51419PhylomeDB:Q9ZRE2
PRIDE:Q9ZRE2PRO:PR:Q9ZRE2PROSITE:PS51419ProteinModelPortal:Q9ZRE2
Proteomes:UP000006548RefSeq:NP_187779.1SMR:Q9ZRE2STRING:3702.AT3G11730.1
SUPFAM:SSF52540SwissPalm:Q9ZRE2TAIR:AT3G11730tair10-symbols:ATFP8
tair10-symbols:ATRABD1tair10-symbols:RABD1TIGRfam:TIGR00231TIGRFAMs:TIGR00231
UniGene:At.18731UniProt:Q9ZRE2
Coordinates (TAIR10) chr3:-:3709490..3711397
Molecular Weight (calculated) 22726.00 Da
IEP (calculated) 4.90
GRAVY (calculated) -0.31
Length 205 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)