suba logo
AT3G11710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : lysyl-tRNA synthetase 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G11710-MONOMERBioGrid:5677EC:6.1.1.6eggNOG:COG1190
eggNOG:KOG1885EMBL:AC009918EMBL:AF125574EMBL:AY099551
EMBL:BT002123EMBL:CP002686EnsemblPlants:AT3G11710EnsemblPlants:AT3G11710.1
entrez:820343Gene3D:2.40.50.140GeneID:820343Genevisible:Q9ZPI1
GO:GO:0003677GO:GO:0004824GO:GO:0005524GO:GO:0005829
GO:GO:0006430GO:GO:0009506GO:GO:0046872Gramene:AT3G11710.1
gramene_pathway:6.1.1.6gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_00252hmmpanther:PTHR22594
hmmpanther:PTHR22594:SF35HOGENOM:HOG000236577InParanoid:Q9ZPI1InterPro:IPR002313
InterPro:IPR004364InterPro:IPR004365InterPro:IPR006195InterPro:IPR012340
InterPro:IPR018149InterPro:IPR018150iPTMnet:Q9ZPI1KEGG:ath:AT3G11710
KO:K04567ncoils:CoilOMA:GRNIEKYPANTHER:PTHR22594
PaxDb:Q9ZPI1Pfam:PF00152Pfam:PF01336Pfam:Q9ZPI1
Pfscan:PS50862PhylomeDB:Q9ZPI1PIRSF:PIRSF039101PRIDE:Q9ZPI1
PRINTS:PR00982PRO:PR:Q9ZPI1PROSITE:PS50862ProteinModelPortal:Q9ZPI1
Proteomes:UP000006548RefSeq:NP_187777.1SMR:Q9ZPI1STRING:3702.AT3G11710.1
SUPFAM:SSF50249SUPFAM:SSF55681TAIR:AT3G11710tair10-symbols:ATKRS-1
TIGRfam:TIGR00499TIGRFAMs:TIGR00499UniGene:At.23369UniProt:Q9ZPI1
Coordinates (TAIR10) chr3:-:3702359..3705613
Molecular Weight (calculated) 70891.70 Da
IEP (calculated) 6.15
GRAVY (calculated) -0.57
Length 626 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGAADQTTK ALSELAMDSS TTLNAAESSA GDGAGPRSKN ALKKEQKMKQ KEEEKRRKDE EKAEKAKQAP KASSQKAVAA DDEEMDATQY YENRLKYLAA
101: EKAKGENPYP HKFAVSMSIP KYIETYGSLN NGDHVENAEE SLAGRIMSKR SSSSKLFFYD LHGDDFKVQV MADASKSGLD EAEFLKLHSN AKRGDIVGVI
201: GFPGKTKRGE LSIFPRSFIL LSHCLHMMPR KADNVNAKKP EIWVPGQTRN PEAYVLKDQE SRYRQRHLDM ILNVEVRQIF RTRAKIISYV RRFLDNKNFL
301: EVETPMMNMI AGGAAARPFV THHNDLDMRL YMRIAPELYL KQLIVGGLER VYEIGKQFRN EGIDLTHNPE FTTCEFYMAF ADYNDLMEMT EVMLSGMVKE
401: LTGGYKIKYN ANGYDKDPIE IDFTPPFRRI EMIGELEKVA KLNIPKDLAS EEANKYLIDA CARFDVKCPP PQTTARLLDK LVGEFLEPTC VNPTFIINQP
501: EIMSPLAKWH RSKSGLTERF ELFINKHELC NAYTELNDPV VQRQRFADQL KDRQSGDDEA MALDETFCNA LEYGLAPTGG WGLGIDRLSM LLTDSLNIKE
601: VLFFPAMRPP QEESAAAQAP LTEEKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)