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AT3G11700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FASCICLIN-like arabinogalactan protein 18 precursor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FASCICLIN-like arabinogalactan protein 18 precursor (FLA18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone, cell adhesion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 17 precursor (TAIR:AT5G06390.1); Has 488 Blast hits to 470 proteins in 128 species: Archae - 2; Bacteria - 195; Metazoa - 32; Fungi - 4; Plants - 192; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2335eggNOG:KOG1437EMBL:AC009918EMBL:AY056197EMBL:AY058879EMBL:AY133794EMBL:CP002686
EnsemblPlants:AT3G11700EnsemblPlants:AT3G11700.1entrez:820342Gene3D:2.30.180.10GeneID:820342Genevisible:Q93W32GO:GO:0005576
GO:GO:0005773Gramene:AT3G11700.1hmmpanther:PTHR32499hmmpanther:PTHR32499:SF3HOGENOM:HOG000240476InParanoid:Q93W32InterPro:IPR000782
KEGG:ath:AT3G11700OMA:GSNQWPEPaxDb:Q93W32Pfam:PF02469Pfam:Q93W32Pfscan:PS50213PhylomeDB:Q93W32
PRIDE:Q93W32PRO:PR:Q93W32PROSITE:PS50213ProteinModelPortal:Q93W32Proteomes:UP000006548RefSeq:NP_566398.1SMART:SM00554
SMR:Q93W32STRING:3702.AT3G11700.1SUPFAM:SSF82153TAIR:AT3G11700tair10-symbols:FLA18TMHMM:TMhelixUniGene:At.22262
UniProt:Q93W32
Coordinates (TAIR10) chr3:+:3698992..3700971
Molecular Weight (calculated) 50795.00 Da
IEP (calculated) 7.22
GRAVY (calculated) -0.28
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRCIYGCSV ITIFFSFFFL LNASALESGH HNITGSGQIN SNSVLVALLD SRYTELAELV EKALLLQTLE DAVGRHNITI FAPRNEALER DLDPDFKRFL
101: LQPGNLKSLQ TLLLSHIIPK RVGSNQWPEE NSGRVKHVTL GHDQVLHLSK LKGTNGKRLV NSAVITRPDD LTRPDGLIHG IERLLIPRSV QEDFNRRRNL
201: RSISAVLPEG APEIDPRTNR LKKSATAVSV PAGSPPVLPI ESAMAPGPSL APAPAPGPGG AHKHFNGDAQ VKDFIHTLLH YGGYNEMADI LVNLTSLATE
301: MGRLVSEGYV LTVLAPNDEA MGKLTTDQLS EPGAPEQIMY YHIIPEYQTE ESMYNSVRRF GKVKYETLRF PHKVGAKEAD GSVKFGSGDR SAYLFDPDIY
401: TDGRISVQGI DGVLFPEEKE EETVKKPTGP VKKVVQPRRG KLLEVACSML GAIGKDSYLS RC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)