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AT3G11690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J451eggNOG:ENOG410Z5JUEMBL:AC009918EMBL:BT033155
EMBL:CP002686EnsemblPlants:AT3G11690EnsemblPlants:AT3G11690.1entrez:820341
GeneID:820341Gramene:AT3G11690.1hmmpanther:PTHR33264hmmpanther:PTHR33264:SF5
HOGENOM:HOG000090657KEGG:ath:AT3G11690OMA:SEFAIHPPhylomeDB:Q9SRM8
Proteomes:UP000006548RefSeq:NP_566397.1TAIR:AT3G11690UniGene:At.24161
UniGene:At.74030UniProt:Q9SRM8
Coordinates (TAIR10) chr3:+:3695484..3696242
Molecular Weight (calculated) 27857.60 Da
IEP (calculated) 8.75
GRAVY (calculated) -0.67
Length 252 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTTLRYDPR QISRQTKPSD TPSSSPSRSN RRQPLLQRSL SSPSPRASCG GSTPAEFCGG TTASCAAVWC CCPCGLVNLL VLAIYKVPKG ICRRAIRSRR
101: RKQLVKNGIL PPLPTDGKNE RMQRVFQNSE FAIHPLDSDD VSDDEDDDNF LDLKYIGKSV ATGFTTEEET DEDDEAVLAL EKEMWNRFYG AGFWRSPSQR
201: ESVSSPRVSK SLSSSPRQSF TEVYRNRDTT VRGGGGGATV VAATPRAVRH FD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)