suba logo
AT3G11620.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.653
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2305 (InterPro:IPR019363); Has 334 Blast hits to 332 proteins in 157 species: Archae - 0; Bacteria - 7; Metazoa - 123; Fungi - 108; Plants - 47; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJJSeggNOG:ENOG410ZTV7EMBL:AK229136EMBL:CP002686EnsemblPlants:AT3G11620EnsemblPlants:AT3G11620.1EnsemblPlants:AT3G11620.2
entrez:820334ESTHER:arath-T19F11.2ExpressionAtlas:Q0WPD9Gene3D:3.40.50.1820GeneID:820334Gramene:AT3G11620.1Gramene:AT3G11620.2
hmmpanther:PTHR13390hmmpanther:PTHR13390:SF0HOGENOM:HOG000030029InterPro:IPR019363InterPro:IPR029058OMA:GTIDPWCPANTHER:PTHR13390
Pfam:PF10230PhylomeDB:Q0WPD9Proteomes:UP000006548RefSeq:NP_566394.1RefSeq:NP_850560.1SUPFAM:SSF53474TAIR:AT3G11620
UniGene:At.39721UniProt:Q0WPD9
Coordinates (TAIR10) chr3:-:3669551..3671734
Molecular Weight (calculated) 35097.30 Da
IEP (calculated) 7.66
GRAVY (calculated) -0.04
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: METQNKLMNE TKRHVKSRLC RVSGSMTEMM EIQAENPTFH VLFIPGNPGV VSFYKDFLES LYEFLGGNAS VIAIGQISHT SKDWESGRLF SFQEQIDHKI
101: DFIRQELESV KVPIILVGHS IGSYISLELL KKFSDKVVYC IGLYPFLTLN QQSTKQSLIG KLAASSVLSA TASFLIASLR LLPMSAARLL VSKSIGASWS
201: DTAVQATCTH LRQYHTMRNV LFMAKSEFRE LAAEPDWDFM RENQSKLAFL FGIDDHWGPL QLFEEISKQA PHTSLSIERE GHTHGFCCTV AGSAWVAQHV
301: ATLIKNRFSQ LQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)