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AT3G11560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LETM1-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LETM1-like protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LETM1-like protein (TAIR:AT5G06220.2); Has 56 Blast hits to 54 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRSPeggNOG:KOG1043EMBL:AY070457EMBL:AY096467EMBL:CP002686EnsemblPlants:AT3G11560EnsemblPlants:AT3G11560.1
entrez:820329ExpressionAtlas:Q8VYL0GeneID:820329Gramene:AT3G11560.1hmmpanther:PTHR14009hmmpanther:PTHR14009:SF9HOGENOM:HOG000030606
ncoils:CoilPhylomeDB:Q8VYL0Proteomes:UP000006548RefSeq:NP_850999.1STRING:3702.AT3G11560.2TAIR:AT3G11560UniGene:At.28347
UniProt:Q8VYL0
Coordinates (TAIR10) chr3:+:3639553..3643450
Molecular Weight (calculated) 69683.10 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.24
Length 619 amino acids
Sequence (TAIR10)
(BLAST)
001: MAARLQRPGL VSSSSTSKPC LPRMSIVTFI SCKRTVHLEY LSNCLSNPRS QLFVRYGFLE RSNKKKSQRL VLASAEDGVA INGSPQPRSS SNLEDMRTSF
101: TGSLQDENNS NGLNQSLHDA ARSIELAVKE KITPSRFSWF PSTWLGADKY AWVKTLSYQA SLYSLLQAVN EISSRGNYRD EDINVFVQRS LSRQAAPLEN
201: MMRENLSSKH PKAYEWFWSE QVPSVVTSFV NYLEGDQRFV AATSVYAKGK SAAASNEIEV SLLMLVLNCI AAITKVGPAK FSCPPFFSMI PDTTGRLMEK
301: LVDFVPLPQA YHSIKSIGLQ REFLTHFGPR AAVCRVNGDI DTDEVIFWVD LIQKQLQRAI DREKIWSKLT TSESIEVLER DLAIFGFFIA LGRSTQSILA
401: ANGFDSLENP LEDLVRHLIG GSVLYYPQLS AISSYQLYVE VVCEELEWIP FYPNNTGTQP PNQSHGHKTK PEGPPNYEVI PQLLDVCSYW LQSFIKYSKW
501: PENPSNVKAA KFLSKGHKTL VRCKEELGIL KNASSIVRES NSFDKALESV DEALVRLESL LQELYVSNSS SGKEQIKAAC SDLEKIRKLK KEAEFLEATF
601: RAKAASLQQV FFFHCHFLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)