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AT3G11530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Vacuolar protein sorting 55 (VPS55) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Vacuolar protein sorting 55 (VPS55) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting 55 (VPS55) family protein (TAIR:AT1G32410.5); Has 298 Blast hits to 298 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 139; Plants - 84; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111UCZeggNOG:KOG2174EMBL:CP002686EnsemblPlants:AT3G11530
EnsemblPlants:AT3G11530.1EnsemblPlants:AT3G11530.2entrez:820326GeneID:820326
GO:GO:0005773GO:GO:0016021Gramene:AT3G11530.1Gramene:AT3G11530.2
InterPro:IPR007262KEGG:ath:AT3G11530OMA:FFIFVCTPfam:PF04133
Proteomes:UP000006548RefSeq:NP_566391.1RefSeq:NP_974285.2STRING:3702.AT3G11530.1
TAIR:AT3G11530TMHMM:TMhelixUniGene:At.22373UniProt:F4J6B8
Coordinates (TAIR10) chr3:-:3628801..3629885
Molecular Weight (calculated) 12472.50 Da
IEP (calculated) 4.76
GRAVY (calculated) 0.86
Length 113 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSSSILLQI LACAIYGNWW PMLSALMYVV VPMPCMFFGG GSTQFLISRD GGGWIDAAKF LTGASTVGSL AIPIILRHAQ MIETGAMLIE FTSFFIFICT
101: VMCFHRASLD DDW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)