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AT3G11520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CYCLIN B1;3
Curator
Summary (TAIR10)
Encodes a B-type mitotic cyclin.
Computational
Description (TAIR10)
CYCLIN B1;3 (CYCB1;3); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle, response to cyclopentenone, cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G06150.1); Has 4455 Blast hits to 4454 proteins in 375 species: Archae - 0; Bacteria - 0; Metazoa - 2045; Fungi - 567; Plants - 1152; Viruses - 37; Other Eukaryotes - 654 (source: NCBI BLink).
Protein Annotations
BioGrid:5659DNASU:820325eggNOG:COG5024eggNOG:KOG0653
EMBL:AC008153EMBL:AK227951EMBL:BT006437EMBL:CP002686
EMBL:L27224EnsemblPlants:AT3G11520EnsemblPlants:AT3G11520.1entrez:820325
Gene3D:1.10.472.10GeneID:820325Genevisible:Q39069GO:GO:0005634
GO:GO:0007049GO:GO:0051301Gramene:AT3G11520.1hmmpanther:PTHR10177
hmmpanther:PTHR10177:SF247HOGENOM:HOG000167672InParanoid:Q39069IntAct:Q39069
InterPro:IPR004367InterPro:IPR006671InterPro:IPR013763KEGG:ath:AT3G11520
KO:K05868OMA:NESKPQMPaxDb:Q39069Pfam:PF00134
Pfam:PF02984Pfam:Q39069PhylomeDB:Q39069PIR:S45294
PRIDE:Q39069PRO:PR:Q39069PROSITE:PS00292ProteinModelPortal:Q39069
Proteomes:UP000006548RefSeq:NP_187759.2scanprosite:PS00292SMART:SM00385
SMART:SM01332SMR:Q39069STRING:3702.AT3G11520.1SUPFAM:SSF47954
TAIR:AT3G11520tair10-symbols:CYC2tair10-symbols:CYCB1;3UniGene:At.39734
UniProt:Q39069
Coordinates (TAIR10) chr3:-:3625475..3627139
Molecular Weight (calculated) 46269.20 Da
IEP (calculated) 9.36
GRAVY (calculated) -0.20
Length 414 amino acids
Sequence (TAIR10)
(BLAST)
001: MATGPVVHPQ PVRGDPIDLK NAAAKNRRAL GDIGNVDSLI GVEGGKLNRP ITRNFRAQLL ENAQVAAAAN KKAPILDGVT KKQEVVRAVQ KKARGDKREP
101: SKPIEVIVIS PDTNEVAKAK ENKKKVTYSS VLDARSKAAS KTLDIDYVDK ENDLAAVEYV EDMYIFYKEV VNESKPQMYM HTQPEIDEKM RSILIDWLVE
201: VHVKFDLSPE TLYLTVNIID RFLSLKTVPR RELQLVGVSA LLIASKYEEI WPPQVNDLVY VTDNSYNSRQ ILVMEKTILG NLEWYLTVPT QYVFLVRFIK
301: ASGSDQKLEN LVHFLAELGL MHHDSLMFCP SMLAASAVYT ARCCLNKTPT WTDTLKFHTG YSESQLMDCS KLLAFIHSKA GESKLRGVLK KYSKLGRGAV
401: ALISPAKSLM SSAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)