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AT3G11510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:17934214 (2008): cytosol
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S11 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S11 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971), Ribosomal S11, conserved site (InterPro:IPR018102); BEST Arabidopsis thaliana protein match is: Ribosomal protein S11 family protein (TAIR:AT2G36160.1); Has 8773 Blast hits to 8773 proteins in 2901 species: Archae - 250; Bacteria - 4863; Metazoa - 587; Fungi - 162; Plants - 736; Viruses - 0; Other Eukaryotes - 2175 (source: NCBI BLink).
Protein Annotations
BioGrid:5658eggNOG:COG0100eggNOG:KOG0407EMBL:AC008153EMBL:AY088571EMBL:CP002686EnsemblPlants:AT3G11510
EnsemblPlants:AT3G11510.1entrez:820324ExpressionAtlas:Q9CAX6Gene3D:3.30.420.80GeneID:820324Genevisible:Q9CAX6GO:GO:0003735
GO:GO:0005730GO:GO:0006412GO:GO:0022626GO:GO:0022627Gramene:AT3G11510.1HAMAP:MF_01310hmmpanther:PTHR11759
hmmpanther:PTHR11759:SF12HOGENOM:HOG000111598InParanoid:Q9CAX6InterPro:IPR001971InterPro:IPR018102iPTMnet:Q9CAX6KEGG:ath:AT3G11510
KO:K02955OMA:MSIGRIEPANTHER:PTHR11759PaxDb:Q9CAX6Pfam:PF00411Pfam:Q9CAX6PhylomeDB:Q9CAX6
PIRSF:PIRSF002131PRIDE:Q9CAX6PRO:PR:Q9CAX6PROSITE:PS00054ProteinModelPortal:Q9CAX6Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_187758.1scanprosite:PS00054SMR:Q9CAX6STRING:3702.AT3G11510.1SUPFAM:SSF53137TAIR:AT3G11510UniGene:At.22886
UniProt:Q1H555UniProt:Q9CAX6
Coordinates (TAIR10) chr3:-:3623757..3624866
Molecular Weight (calculated) 16273.80 Da
IEP (calculated) 11.30
GRAVY (calculated) -0.50
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKRKTKEPK VETVTLGPSV REGEQVFGVV HIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AMHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)