AT3G11460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G30700.1); Has 38316 Blast hits to 13864 proteins in 256 species: Archae - 0; Bacteria - 8; Metazoa - 61; Fungi - 80; Plants - 37599; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3608250..3610121 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69130.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.91 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 623 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIVVTSFVRN SAVAAVASTP WNVRLRELAY QSLFSESISL YRSMLRSGSS PDAFSFPFIL KSCASLSLPV SGQQLHCHVT KGGCETEPFV LTALISMYCK 101: CGLVADARKV FEENPQSSQL SVCYNALISG YTANSKVTDA AYMFRRMKET GVSVDSVTML GLVPLCTVPE YLWLGRSLHG QCVKGGLDSE VAVLNSFITM 201: YMKCGSVEAG RRLFDEMPVK GLITWNAVIS GYSQNGLAYD VLELYEQMKS SGVCPDPFTL VSVLSSCAHL GAKKIGHEVG KLVESNGFVP NVFVSNASIS 301: MYARCGNLAK ARAVFDIMPV KSLVSWTAMI GCYGMHGMGE IGLMLFDDMI KRGIRPDGAV FVMVLSACSH SGLTDKGLEL FRAMKREYKL EPGPEHYSCL 401: VDLLGRAGRL DEAMEFIESM PVEPDGAVWG ALLGACKIHK NVDMAELAFA KVIEFEPNNI GYYVLMSNIY SDSKNQEGIW RIRVMMRERA FRKKPGYSYV 501: EHKGRVHLFL AGDRSHEQTE EVHRMLDELE TSVMELAGNM DCDRGEEVSS TTREHSERLA IAFGILNSIP GTEILVIKNL RVCEDCHVFL KQVSKIVDRQ 601: FVVRDASRFH YFKDGVCSCK DYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)