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AT3G11400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : eukaryotic translation initiation factor 3G1
Curator
Summary (TAIR10)
One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3).
Computational
Description (TAIR10)
eukaryotic translation initiation factor 3G1 (EIF3G1); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Translation initiation factor 3, RNA-binding subunit (InterPro:IPR017334), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3G2 (TAIR:AT5G06000.1); Has 999045 Blast hits to 996617 proteins in 36057 species: Archae - 21687; Bacteria - 600727; Metazoa - 203286; Fungi - 24712; Plants - 56079; Viruses - 69236; Other Eukaryotes - 23318 (source: NCBI BLink).
Protein Annotations
EMBL:AC008153EMBL:AF428308EMBL:AJ293728EMBL:AY074582
EMBL:AY133625EMBL:CP002686EnsemblPlants:AT3G11400EnsemblPlants:AT3G11400.1
entrez:820313ExpressionAtlas:Q9SSJ0Gene3D:3.30.70.330GeneID:820313
GO:GO:0000166GO:GO:0001731GO:GO:0003743GO:GO:0005852
GO:GO:0006446GO:GO:0008270GO:GO:0016282GO:GO:0033290
Gramene:AT3G11400.1HAMAP:MF_03006hmmpanther:PTHR10352IntAct:Q9SSJ0
InterPro:IPR000504InterPro:IPR012677InterPro:IPR017334InterPro:IPR024675
PANTHER:PTHR10352Pfam:PF00076Pfam:PF12353Pfscan:PS50102
PhylomeDB:Q9SSJ0PIRSF:PIRSF037949PROSITE:PS50102Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702
RefSeq:NP_187747.1SMART:SM00360SMR:Q9SSJ0SUPFAM:SSF54928
TAIR:AT3G11400tair10-symbols:ATEIF3G1tair10-symbols:EIF3G1UniGene:At.25153
UniProt:Q9SSJ0
Coordinates (TAIR10) chr3:+:3578536..3580366
Molecular Weight (calculated) 32716.60 Da
IEP (calculated) 8.45
GRAVY (calculated) -0.71
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MTIDSQQKTS KFRWGEMDED EDLDFLLPPK QVIGPDENGL KTTIEYKFND EENKVKITTR TRVRKLASAR LNKRAMERRN WPKFGDAANE EAGSHLTMVS
101: TEEILLERPR APGTKADESK ATGDGLSQLG KGGAVLMVCR ICHKKGDHWT SKCPYKDLAA PTDVFIDKPP TGESSTMSAA PGTGKAAYVP PSMRAGADRS
201: AVGSDMRRRN DENSVRVTNL SEDTREPDLM ELFHPFGAVT RVYVAIDQKT GVSRGFGFVN FVSREDAQRA INKLNGYGYD NLILRVEWAT PRPT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)