AT3G11330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.896 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : plant intracellular ras group-related LRR 9 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes PIRL9, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
plant intracellular ras group-related LRR 9 (PIRL9); INVOLVED IN: pollen development, microgametogenesis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 1 (TAIR:AT5G05850.1); Has 80076 Blast hits to 32245 proteins in 1215 species: Archae - 20; Bacteria - 6549; Metazoa - 31794; Fungi - 2648; Plants - 34170; Viruses - 12; Other Eukaryotes - 4883 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3552330..3554695 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55505.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.48 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 499 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAEPNPKNF PVLSYVLARL PSFTAKSPSS SVPPFDIEQP PPSSSSSSIE IVTQMPHLTQ PDVLASMTSA ISDVAETRSI LRTLGPRPDH ESVDKARAKL 101: SEIESFLSES FEDIALTDAA AKDEKRRQEM DQEKTWCESI LKLDEVHASY EKLLKEAEER LVRIYESAEK NAAEDEENVA AVEVNEEVVG ILQHASANPV 201: DRVDLSGRKL RLLPEAFGRI QGLLVLNLSN NKLESIPDSI AGLHSLVELD VSTNSLETLP DSIGLLSKLK ILNVSTNKLT SLPDSICRCG SLVILDVSFN 301: RLTYLPTNIG PELVNLEKLL VQYNKIRSFP TSIGEMRSLK HLDAHFNELN GLPDSFVLLT NLEYLNLSSN FSDLKDLPFS FGELISLQEL DLSNNQIHAL 401: PDTFGTLDSL TKLNVDQNPL VVPPEEVVKE GVEAVKTYMG QRRISMLEEE EKKKMEEEME QANAGWLTRT TSKLKTYVAD VSEYLGSNSP RDPYLERQL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)