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AT3G11320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G05820.1); Has 3089 Blast hits to 3084 proteins in 315 species: Archae - 10; Bacteria - 135; Metazoa - 742; Fungi - 470; Plants - 1357; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP1SeggNOG:KOG1441EMBL:AC073395EMBL:AK227871
EMBL:BT015807EMBL:CP002686EnsemblPlants:AT3G11320EnsemblPlants:AT3G11320.1
entrez:820304ExpressionAtlas:Q5XF09GeneID:820304Genevisible:Q5XF09
GO:GO:0005783GO:GO:0005794GO:GO:0008643GO:GO:0016021
Gramene:AT3G11320.1hmmpanther:PTHR11132hmmpanther:PTHR11132:SF104HOGENOM:HOG000239973
InParanoid:Q5XF09InterPro:IPR004853KEGG:ath:AT3G11320OMA:VSIMIFR
PaxDb:Q5XF09Pfam:PF03151Pfam:Q5XF09PhylomeDB:Q5XF09
PRIDE:Q5XF09PRO:PR:Q5XF09ProteinModelPortal:Q5XF09Proteomes:UP000006548
RefSeq:NP_187740.2STRING:3702.AT3G11320.1SUPFAM:0043518TAIR:AT3G11320
TMHMM:TMhelixUniGene:At.39778UniProt:I1VCA5UniProt:Q5XF09
Coordinates (TAIR10) chr3:-:3547017..3548539
Molecular Weight (calculated) 33837.60 Da
IEP (calculated) 10.25
GRAVY (calculated) 0.89
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIAANGRFF TIGLVASWYS SNIGVLLLNK YLLSNYGFKY PIFLTMCHMT ACSLLSYVAI AWMKMVPMQT IRSRVQFLKI AALSLVFCVS VVFGNISLRF
101: LPVSFNQAIG ATTPFFTAVF AYLITFKREA WLTYFTLVPV VTGVVIASGS EPSFHLFGFI MCIAATAARA LKSVLQGILL SSEGEKLNSM NLLLYMAPIA
201: VVFLLPATLI MEKNVVGITI ALARDDFRIV WYLLFNSALA YFVNLTNFLV TKHTSALTLQ VLGNAKGAVA VVVSILIFRN PVSVTGMLGY SLTVCGVILY
301: SEAKKRSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)