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AT3G11200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : alfin-like 2
Curator
Summary (TAIR10)
AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational
Description (TAIR10)
alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 1527 Blast hits to 1482 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 758; Fungi - 235; Plants - 458; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Protein Annotations
BioGrid:5624eggNOG:ENOG410YG6PeggNOG:KOG1632EMBL:AC009991EMBL:AC073395EMBL:AY058833EMBL:AY085138
EMBL:AY143832EMBL:CP002686EnsemblPlants:AT3G11200EnsemblPlants:AT3G11200.1entrez:820290ExpressionAtlas:Q9SRM4Gene3D:3.30.40.10
GeneID:820290Genevisible:Q9SRM4GO:GO:0005634GO:GO:0005829GO:GO:0006351GO:GO:0006355GO:GO:0008270
GO:GO:0016568hmmpanther:PTHR12321hmmpanther:PTHR12321:SF46HOGENOM:HOG000238550InParanoid:Q9SRM4IntAct:Q9SRM4InterPro:IPR001965
InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786InterPro:IPR019787InterPro:IPR021998iPTMnet:Q9SRM4KEGG:ath:AT3G11200
OMA:HTNESWEPaxDb:Q9SRM4Pfam:PF00628Pfam:PF12165Pfam:Q9SRM4Pfscan:PS50016PhylomeDB:Q9SRM4
PRIDE:Q9SRM4PRO:PR:Q9SRM4PROSITE:PS01359PROSITE:PS50016ProteinModelPortal:Q9SRM4Proteomes:UP000006548RefSeq:NP_187729.1
scanprosite:PS01359SMART:SM00249SMR:Q9SRM4STRING:3702.AT3G11200.1SUPFAM:SSF57903TAIR:AT3G11200tair10-symbols:AL2
UniGene:At.17411UniGene:At.22585UniProt:Q9SRM4
Coordinates (TAIR10) chr3:-:3508387..3510418
Molecular Weight (calculated) 27833.60 Da
IEP (calculated) 5.46
GRAVY (calculated) -0.71
Length 246 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)