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AT3G11100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sequence-specific DNA binding transcription factors
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: MADF domain (InterPro:IPR006578); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT5G05550.1); Has 692 Blast hits to 654 proteins in 102 species: Archae - 2; Bacteria - 29; Metazoa - 76; Fungi - 72; Plants - 388; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YYXYeggNOG:KOG4282EMBL:AY064137EMBL:CP002686
EnsemblPlants:AT3G11100EnsemblPlants:AT3G11100.1entrez:820281GeneID:820281
GO:GO:0003700GO:GO:0005634GO:GO:0006355GO:GO:0010468
Gramene:AT3G11100.1hmmpanther:PTHR31307hmmpanther:PTHR31307:SF9IntAct:Q8VZI9
InterPro:IPR006578KEGG:ath:AT3G11100ncoils:CoilOMA:DDDAGDW
Pfam:PF13837PhylomeDB:Q8VZI9Proteomes:UP000006548RefSeq:NP_566386.1
SMART:SM00595SMR:Q8VZI9STRING:3702.AT3G11100.1TAIR:AT3G11100
UniGene:At.27074UniProt:Q8VZI9
Coordinates (TAIR10) chr3:-:3476490..3477320
Molecular Weight (calculated) 28387.30 Da
IEP (calculated) 5.17
GRAVY (calculated) -0.99
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: METTPETQSK THRLPAGRED WWSEDATATL IEAWGDRYVN LNRGNLRQND WKEVADAVNS SHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PLSNWCFFDR
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)