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AT3G11070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): mitochondrion
  • PMID:22574745 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21311031 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): unclear
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Outer membrane OMP85 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Outer membrane OMP85 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: outer membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184), Surface antigen variable number (InterPro:IPR010827); BEST Arabidopsis thaliana protein match is: Outer membrane OMP85 family protein (TAIR:AT5G05520.1); Has 1600 Blast hits to 1598 proteins in 558 species: Archae - 0; Bacteria - 789; Metazoa - 142; Fungi - 132; Plants - 78; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4775eggNOG:KOG2602EMBL:AC009991EMBL:AC073395
EMBL:AY099576EMBL:BT002158EMBL:CP002686EnsemblPlants:AT3G11070
EnsemblPlants:AT3G11070.1entrez:820278GeneID:820278GO:GO:0005739
GO:GO:0031307Gramene:AT3G11070.1hmmpanther:PTHR12815hmmpanther:PTHR12815:SF15
HOGENOM:HOG000241488IntAct:Q9SRL6InterPro:IPR000184InterPro:IPR010827
KEGG:ath:AT3G11070KO:K07277OMA:WDQSSEIPfam:PF01103
Pfam:PF07244PhylomeDB:Q9SRL6Proteomes:UP000006548RefSeq:NP_187718.1
STRING:3702.AT3G11070.1SwissPalm:Q9SRL6TAIR:AT3G11070UniGene:At.39812
UniProt:Q9SRL6
Coordinates (TAIR10) chr3:+:3467801..3469815
Molecular Weight (calculated) 57211.90 Da
IEP (calculated) 5.18
GRAVY (calculated) -0.36
Length 520 amino acids
Sequence (TAIR10)
(BLAST)
001: MANPTENLDA NPQIREPEAE EEVEELNGYE GDDGGEDDDG EDDDTESKSQ TRESGSSVDR IKAESLFRRM RAAPVPVRVH DVIIGGNEKT KDHIIEAEVD
101: AVREATTLQE LLEASRVANS NLRALDIFDS VNITLDSGPP ELPGTTNVVI DVVESKSPLT GQIGAYTRAE ARSSSVEASL KYKNIFGYGD IWDGSIVYGC
201: DNSAEVGLGM YLPRFRGLST PFTSRLFLST QDWLKFSSYK ERSLGLSLGL FSSKYHELIY TIAWRNLIDP SQAAAVSIRR QLGHSLLSAL KYTFRFDQRN
301: SSLRPTNGYA FISTSQIGGL APDSRSLRFL KQEVDLRYAV PFGFYNAAIN FGVSGGVSFP WGSGYQNRPS SIPERFFLGG NSSPVCSLSG PSALWGFKTR
401: GVGPSEPKRK GDSERDFVGG DAAVTAFADL SFDLPVRWLR ERGIHGHVFA CAGNMAKLSE NEFRNFTAPK FLETFRTSVG AGIVLPTSLF RMELNYCHIL
501: KKQEHDQARS GVFLTFSASS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)