AT3G11000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DCD (Development and Cell Death) domain protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DCD (Development and Cell Death) domain protein; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01660.1); Has 325 Blast hits to 316 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 6; Plants - 296; Viruses - 1; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3448442..3450283 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53881.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.61 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||
| Length | 488 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCVRNLKKGD LCGVIFGCKF STIKECYAKN LFGLPAPHMA YIKNIDPGLT LFLFNYSDRT LHGIFEAASE GKLNIDSKAW SPNGTDPSPY PAQVKVRVRV 101: RCEPLPEEKF SPVIVENYND DKMFWFELDR GQTNKLLRLF KPSPSVRPPT ISRDAVPPPR KPIPASSLAQ IGDSGATRID KWSNLFKSSD ESTKNKEKDS 201: KEGALGAGSR LVNLGKTKEW ETASNNADER RTQPSVSQSG TSYSSALSHM TASSTQEKKN SITNEGSSQA CKGVENPWTS AARVPPIHQD SGGFRNAAME 301: GEDVKVNAYH HQQNLHPTQK GTSTTANNRI VPSISKEEPA EDTYSFIDWD ATSSFQVHLD GLNKILEDPK DKECFKSLVG NTGQASSSMV PNSWEDDFEE 401: RSIAKSPCGS SYVSAGTGDV VDDIGRMDNF KMEIGSPTVV DILTELLAEV KELKHTQLKQ AERMITLEME LLETRRDILR LKGSNGSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)