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AT3G10920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23444301 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:20061580 (2010): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:12970493 (2003): mitochondrion
  • PMID:12606038 (2003): mitochondrion
  • PMID:11743115 (2001): mitochondrion
  • PMID:11743114 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : manganese superoxide dismutase 1
Curator
Summary (TAIR10)
manganese superoxide dismutase (MSD1)
Computational
Description (TAIR10)
manganese superoxide dismutase 1 (MSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding, metal ion binding; INVOLVED IN: response to zinc ion, response to salt stress, defense response to bacterium, removal of superoxide radicals, embryo development ending in seed dormancy; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Iron/manganese superoxide dismutase family protein (TAIR:AT3G56350.1); Has 11404 Blast hits to 11403 proteins in 3385 species: Archae - 194; Bacteria - 8096; Metazoa - 447; Fungi - 710; Plants - 427; Viruses - 1; Other Eukaryotes - 1529 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1754-MONOMEREC:1.15.1.1eggNOG:COG0605eggNOG:KOG0876EMBL:AC009991EMBL:AF061518EMBL:AY059807
EMBL:AY072495EMBL:AY085319EMBL:CP002686EnsemblPlants:AT3G10920EnsemblPlants:AT3G10920.1entrez:820263ExpressionAtlas:O81235
GeneID:820263Genevisible:O81235GO:GO:0004784GO:GO:0005507GO:GO:0005739GO:GO:0005759GO:GO:0009651
GO:GO:0009793GO:GO:0010043GO:GO:0042742GO:GO:0046872gramene_pathway:1.15.1.1gramene_pathway:DETOX1-PWYhmmpanther:PTHR11404
hmmpanther:PTHR11404:SF6HOGENOM:HOG000013583InParanoid:O81235InterPro:IPR001189InterPro:IPR019831InterPro:IPR019832InterPro:IPR019833
iPTMnet:O81235OMA:VIDWVEVPANTHER:PTHR11404PaxDb:O81235PDB:4C7UPDBsum:4C7UPfam:O81235
Pfam:PF00081Pfam:PF02777PhylomeDB:O81235PIR:PA0012PIR:T50827PIRSF:PIRSF000349PRIDE:O81235
PRINTS:PR01703PRO:PR:O81235PROSITE:PS00088ProteinModelPortal:O81235Proteomes:UP000006548Reactome:R-ATH-3299685RefSeq:NP_187703.1
scanprosite:PS00088SMR:O81235STRING:3702.AT3G10920.1SUPFAM:SSF46609SUPFAM:SSF54719TAIR:AT3G10920tair10-symbols:ATMSD1
tair10-symbols:MEE33tair10-symbols:MSD1UniGene:At.11023UniProt:O81235
Coordinates (TAIR10) chr3:+:3418015..3419581
Molecular Weight (calculated) 25445.30 Da
IEP (calculated) 8.84
GRAVY (calculated) -0.34
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)