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AT3G10710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : root hair specific 12
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
root hair specific 12 (RHS12); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: root hair, flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G04960.1); Has 2830 Blast hits to 2766 proteins in 319 species: Archae - 6; Bacteria - 575; Metazoa - 1; Fungi - 191; Plants - 2032; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G10710-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IKMIEMBL:AC011708EMBL:CP002686EnsemblPlants:AT3G10710
EnsemblPlants:AT3G10710.1entrez:820240Gene3D:1.20.140.40Gene3D:2.160.20.10GeneID:820240Genevisible:Q9SG77GO:GO:0005618
GO:GO:0016021GO:GO:0030599GO:GO:0042545GO:GO:0043086GO:GO:0045330GO:GO:0045490GO:GO:0046910
GO:GO:0071944Gramene:AT3G10710.1gramene_pathway:3.1.1.11gramene_pathway:PWY-1081hmmpanther:PTHR31707hmmpanther:PTHR31707:SF48HOGENOM:HOG000217409
InParanoid:Q9SG77InterPro:IPR000070InterPro:IPR006501InterPro:IPR011050InterPro:IPR012334InterPro:IPR033131iPTMnet:Q9SG77
KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT3G10710OMA:TTVIMDSPaxDb:Q9SG77Pfam:PF01095Pfam:PF04043
Pfam:Q9SG77PhylomeDB:Q9SG77PRIDE:Q9SG77PRO:PR:Q9SG77PROSITE:PS00503ProteinModelPortal:Q9SG77Proteomes:UP000006548
RefSeq:NP_187682.1scanprosite:PS00503SMART:SM00856SMR:Q9SG77STRING:3702.AT3G10710.1SUPFAM:SSF101148SUPFAM:SSF51126
TAIR:AT3G10710tair10-symbols:RHS12TIGRfam:TIGR01614TIGRFAMs:TIGR01614TMHMM:TMhelixUniGene:At.53254UniPathway:UPA00545
UniProt:Q9SG77
Coordinates (TAIR10) chr3:+:3352289..3354237
Molecular Weight (calculated) 62106.60 Da
IEP (calculated) 9.89
GRAVY (calculated) -0.23
Length 561 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSPYGKVDE REHVRLEARR KTRKNIAIIA VSLVILAGIV IGAVFGTMAH KKSPETVETN NNGDSISVSV KAVCDVTLHK EKCFETLGSA PNASSLNPEE
101: LFRYAVKITI AEVSKAINAF SSSLGDEKNN ITMNACAELL DLTIDNLNNT LTSSSNGDVT VPELVDDLRT WLSSAGTYQR TCVETLAPDM RPFGESHLKN
201: STELTSNALA IITWLGKIAD SFKLRRRLLT TADVEVDFHA GRRLLQSTDL RKVADIVVAK DGSGKYRTIK RALQDVPEKS EKRTIIYVKK GVYFENVKVE
301: KKMWNVIVVG DGESKSIVSG RLNVIDGTPT FKTATFAVFG KGFMARDMGF INTAGPSKHQ AVALMVSADL TAFYRCTMNA YQDTLYVHAQ RQFYRECTII
401: GTVDFIFGNS ASVLQSCRIL PRRPMKGQQN TITAQGRTDP NMNTGISIHR CNISPLGDLT DVMTFLGRPW KNFSTTVIMD SYLHGFIDRK GWLPWTGDSA
501: PDTIFYGEYK NTGPGASTKN RVKWKGLRFL STKEANRFTV KPFIDGGRWL PATKVPFRSG L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)