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AT3G10690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA GYRASE A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA GYRASE A (GYRA); FUNCTIONS IN: DNA topoisomerase activity, catalytic activity, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: mitochondrion, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA gyrase, subunit A (InterPro:IPR005743), DNA topoisomerase, type IIA, subunit A/C-terminal (InterPro:IPR002205), DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta (InterPro:IPR013758), DNA topoisomerase, type IIA, subunit A, alpha-helical (InterPro:IPR013757), DNA topoisomerase, type IIA, central (InterPro:IPR013760), DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel (InterPro:IPR006691); BEST Arabidopsis thaliana protein match is: topoisomerase II (TAIR:AT3G23890.1); Has 22353 Blast hits to 21396 proteins in 3265 species: Archae - 84; Bacteria - 12907; Metazoa - 182; Fungi - 204; Plants - 111; Viruses - 99; Other Eukaryotes - 8766 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G10690-MONOMERBioGrid:5572EC:5.99.1.3eggNOG:COG0188eggNOG:ENOG410IUD5EMBL:AC011560EMBL:AC011708
EMBL:CP002686EnsemblPlants:AT3G10690EnsemblPlants:AT3G10690.1entrez:820238Gene3D:3.30.1360.40Gene3D:3.90.199.10GeneID:820238
Genevisible:Q9CAF6GO:GO:0003677GO:GO:0003918GO:GO:0005524GO:GO:0005694GO:GO:0005739GO:GO:0006265
GO:GO:0006351GO:GO:0006355GO:GO:0007059GO:GO:0009295GO:GO:0009507GO:GO:0016592Gramene:AT3G10690.1
HAMAP:MF_01897hmmpanther:PTHR10169hmmpanther:PTHR10169:SF48HOGENOM:HOG000076278InParanoid:Q9CAF6IntAct:Q9CAF6InterPro:IPR002205
InterPro:IPR005743InterPro:IPR006691InterPro:IPR013758InterPro:IPR013760InterPro:IPR024946KEGG:ath:AT3G10690KO:K02469
ncoils:CoilOMA:ETVDWVPPaxDb:Q9CAF6Pfam:PF00521Pfam:PF03989Pfam:Q9CAF6PhylomeDB:Q9CAF6
PRIDE:Q9CAF6PRO:PR:Q9CAF6ProteinModelPortal:Q9CAF6Proteomes:UP000006548RefSeq:NP_187680.2SMART:SM00434SMR:Q9CAF6
STRING:3702.AT3G10690.1SUPFAM:SSF101904SUPFAM:SSF56719TAIR:AT3G10690tair10-symbols:GYRATIGRfam:TIGR01063TIGRFAMs:TIGR01063
UniGene:At.39883UniProt:Q9CAF6
Coordinates (TAIR10) chr3:-:3339612..3346243
Molecular Weight (calculated) 104544.00 Da
IEP (calculated) 6.89
GRAVY (calculated) -0.18
Length 950 amino acids
Sequence (TAIR10)
(BLAST)
001: MTPVLCHSTA SIPNPNSLMS LSSTLRLSSS LLRRSFFRFP LTDPLCRLRR TEPSATRFFS SRTPRSGKFV VGAGKRGDEQ VKEESGANNG GLVVSGDESR
101: IVPFELHKEA TESYMSYALS VLLGRALPDV RDGLKPVHRR ILFAMHELGM SSKKPYKKCA RVVGEVLGKF HPHGDTAVYD SLVRMAQSFS LRCPLIQGHG
201: NFGSIDADPP AAMRYTECRL DPLAEAVLLS DLDQDTVDFV ANFDNSQKEP AVLPARLPAL LLNGASGIAV GMATNIPPHN LGELVDVLCA LIHNPEATLQ
301: ELLEYMPAPD FPTGGIIMGN LGVLDAYRTG RGRVVVRGKA EVELLDPKTK RNAVIITEIP YQTNKATLVQ KIAELVENKT LEGISDIRDE SDRNGMRVVI
401: ELKRGGDPAL VLNNLYRHTA LQSSFSCNMV GICDGEPKLM GLKELLQAFI DFRCSVVERR ARFKLSHAQQ RKHIIEGIVV GLDNVDEVIE LITKASSHSS
501: ATAALQSEYG LSEKQAEAIL EITLRRLTAL ERKKFTDESS SLTEQITKLE QLLSTRTNIL KLIEQEAIEL KDRFSSPRRS MLEDSDSGDL EDIDVIPNEE
601: MLMAVSEKGY VKRMKADTFN LQHRGTIGKS VGKLRVDDAM SDFLVCHAHD HVLFFSDRGI VYSTRAYKIP ECSRNAAGTP LVQILSMSEG ERVTSIVPVS
701: EFAEDRYLLM LTVNGCIKKV SLKLFSGIRS TGIIAIQLNS GDELKWVRCC SSDDLVAMAS QNGMVALSTC DGVRTLSRNT KGVTAMRLKN EDKIASMDII
801: PASLRKDMEE KSEDASLVKQ STGPWLLFVC ENGYGKRVPL SSFRRSRLNR VGLSGYKFAE DDRLAAVFVV GYSLAEDGES DEQVVLVSQS GTVNRIKVRD
901: ISIQSRRARG VILMRLDHAG KIQSASLISA ADEEETEGTL SNEAVEAVSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)