suba logo
AT3G10680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT5G04890.1); Has 10151 Blast hits to 7022 proteins in 776 species: Archae - 41; Bacteria - 1142; Metazoa - 3661; Fungi - 700; Plants - 785; Viruses - 49; Other Eukaryotes - 3773 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0071eggNOG:ENOG410JHEWEMBL:AC011560EMBL:AC011708
EMBL:CP002686EnsemblPlants:AT3G10680EnsemblPlants:AT3G10680.1entrez:820237
Gene3D:2.60.40.790GeneID:820237GO:GO:0016021Gramene:AT3G10680.1
hmmpanther:PTHR11527HOGENOM:HOG000153437InterPro:IPR002068InterPro:IPR008978
InterPro:IPR031107KEGG:ath:AT3G10680OMA:KKDERTRPANTHER:PTHR11527
Pfam:PF00011Pfscan:PS01031PhylomeDB:Q9S732PROSITE:PS01031
Proteomes:UP000006548RefSeq:NP_187679.1SMR:Q9S732STRING:3702.AT3G10680.1
SUPFAM:SSF49764TAIR:AT3G10680TMHMM:TMhelixUniGene:At.53253
UniProt:Q9S732
Coordinates (TAIR10) chr3:+:3337773..3339345
Molecular Weight (calculated) 54199.40 Da
IEP (calculated) 9.59
GRAVY (calculated) -0.92
Length 490 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAIFKRPRP GGGRHPPPLA PTVSSFKPRA QWTNSGSSIF LYVNLPGFYR DQIEIKKDER TRTVQIQGQR PLSAQTKARF SEAYRVPDTC DMTKLSTSFS
101: HGLLTIEFPA IVEANKQEKA VQDQEKIGQR SNQEKSGGPG PNGSTLGRKK ALEEEKQVGT SQEKTTPTLN EEAPKTYKSV VEGKRAVPTG SQEKSEAKVK
201: AREAIPSLGG RERAKEEKVV ERKEAAHIVQ QKIGDKLKEE EAKSTPTLGG SLKPKVQAKE EKVIERKKDD DISQLKTGQK VKEKEISRTP TIDARVESKE
301: HAKVVEKKED GEIGQKLEGG RINLGPKKED KFTKPVVGDE ARRIEKNVAQ RNQAEPKLKT KEGDERIKLD VDDGVRNKQD ENNEMVGDMV SEGEIQDRVE
401: QKKIDEAGLA KDRGDLKDNA EVVEPETGPL LVKEGQKKSD MDPPLAVGGR GMGEEESRTY DIPLVNVGVA ALVIMGFGAY VFVPLVKYFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)