suba logo
AT3G10650.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21189294 (2010): nucleus nuclear envelope
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink).
Protein Annotations
BioGrid:5568eggNOG:ENOG410XPV4eggNOG:KOG0845EMBL:AC011560EMBL:AC013428EMBL:AY093026EMBL:BT010595
EMBL:CP002686EnsemblPlants:AT3G10650EnsemblPlants:AT3G10650.1entrez:820234GeneID:820234Genevisible:Q9CAF4GO:GO:0005635
GO:GO:0005643GO:GO:0005829GO:GO:0006997GO:GO:0015031GO:GO:0016973GO:GO:0034399Gramene:AT3G10650.1
hmmpanther:PTHR33416hmmpanther:PTHR33416:SF2HOGENOM:HOG000090881InParanoid:Q9CAF4IntAct:Q9CAF4iPTMnet:Q9CAF4KEGG:ath:AT3G10650
OMA:RMSAHEDPaxDb:Q9CAF4Pfam:Q9CAF4PhylomeDB:Q9CAF4PRIDE:Q9CAF4PRO:PR:Q9CAF4ProteinModelPortal:Q9CAF4
Proteomes:UP000006548RefSeq:NP_187676.1STRING:3702.AT3G10650.1TAIR:AT3G10650UniGene:At.17619UniProt:Q9CAF4
Coordinates (TAIR10) chr3:-:3325562..3330819
Molecular Weight (calculated) 135940.00 Da
IEP (calculated) 10.14
GRAVY (calculated) -0.56
Length 1309 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASAARGESS NPYGGGLGTG GKFRKPTARR SQKTPYDRPT TSVRNAGLGG GDVRGGGWLS KLVDPAQRLI TYSAQRLFGS LSRKRLGSGE TPLQSPEQQK
0101: QLPERGVNQE TKVGHKEDVS NLSMKNGLIR MEDTNASVDP PKDGFTDLEK ILQGKTFTRS EVDRLTTLLR SKAADSSTMN EEQRNEVGMV VRHPPSHERD
0201: RTHPDNGSMN TLVSTPPGSL RTLDECIASP AQLAKAYMGS RPSEVTPSML GLRGQAGRED SVFLNRTPFP QKSPTMSLVT KPSGQRPLEN GFVTPRSRGR
0301: SAVYSMARTP YSRPQSSVKI GSLFQASPSK WEESLPSGSR QGFQSGLKRR SSVLDNDIGS VGPVRRIRQK SNLSSRSLAL PVSESPLSVR ANGGEKTTHT
0401: SKDSAEDIPG SSFNLVPTKS SEMASKILQQ LDKLVSTREK SPSKLSPSML RGPALKSLQN VEAPKFLGNL PEKKANSPDS SYQKQEISRE SVSREVLAQS
0501: EKTGDAVDGT SKTGSSKDQD MRGKGVYMPL TNSLEEHPPK KRSFRMSAHE DFLELDDDLG AASTPCEVAE KQNAFEVEKS HISMPIGEKP LTPSEAMPST
0601: SYISNGDASQ GTSNGSLETE RNKFVAFPIE AVQQSNMASE PTSKFIQGTE KSSISSGKPT SEEKRIPLEE PKKPAAVFPN ISFSPPATGL LNQNSGASAD
0701: IKLEKTSSTA FGVSEAWAKP TESKKTFSNS ASGAESSTSA APTLNGSIFS AGANAVTPPP SNGSLTSSPS FPPSISNIPS DNSVGDMPST VQSFAATHNS
0801: SSIFGKLPTS NDSNSQSTSA SPLSSTSPFK FGQPAAPFSA PAVSESSGQI SKETEVKNAT FGNTSTFKFG GMASADQSTG IVFGAKSAEN KSRPGFVFGS
0901: SSVVGGSTLN PSTAAASAPE SSGSLIFGVT SSSTPGTETS KISASSAATN TGNSVFGTSS FAFTSSGSSM VGGVSASTGS SVFGFNAVSS ASATSSQSQA
1001: SNLFGAGNAQ TGNTGSGTTT STQSIPFQFG SSPSAPSFGL SGNSSLASNS SPFGFSKSEP AVFTSVSTPQ LSSTNSSASS SSTMSSPLFG TSWQAPNSSP
1101: NSGPVFSSSF TTSSTPTTFS FGGSSAATVS STTTPIFGAS TNNTPSPSPI FGFGSTPPTT PQQPVFGNSG TPSQSLFGNS TPGFAFGAPN NGNGINNNQQ
1201: VSMEDSMAED TDQANRASMV APMFGQAAVS MPQPNFAFGG GAATQPPSMA NPFQFGGQPM ASTLQNASPF QASQSLEFQG GGSFSLGSTG GGDKSGRRIF
1301: KAKKSTRKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)