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AT3G10640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SNF7 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VPS60.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G04850.1); Has 1147 Blast hits to 1145 proteins in 230 species: Archae - 3; Bacteria - 8; Metazoa - 447; Fungi - 307; Plants - 230; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPDAeggNOG:KOG1655EMBL:AC013428EMBL:AK228223
EMBL:BT005859EMBL:CP002686EnsemblPlants:AT3G10640EnsemblPlants:AT3G10640.1
entrez:820233ExpressionAtlas:Q9LPN5GeneID:820233GO:GO:0005622
GO:GO:0007034Gramene:AT3G10640.1hmmpanther:PTHR22761hmmpanther:PTHR22761:SF17
HOGENOM:HOG000191086IntAct:Q9LPN5InterPro:IPR005024KEGG:ath:AT3G10640
KO:K12198ncoils:CoilOMA:GNQAYDEPfam:PF03357
PhylomeDB:Q9LPN5Proteomes:UP000006548RefSeq:NP_187675.2SMR:Q9LPN5
STRING:3702.AT3G10640.1TAIR:AT3G10640tair10-symbols:VPS60.1UniGene:At.43749
UniProt:Q9LPN5
Coordinates (TAIR10) chr3:-:3323501..3324905
Molecular Weight (calculated) 26171.90 Da
IEP (calculated) 4.53
GRAVY (calculated) -0.86
Length 235 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRVFGAKKN TEPPPSIQDA SDRINKRGDS VEDKIKKLDV ELCKYKEQLK KTRPGPAQEA VKARAMRVLK QKKMYEGQRD MLYNQTFNLD QVSFAAEGLK
101: DAQQTMTALK SANKELKGMM KTVKIQDIDN LQDEMMDLMD VSSEIQESLG RSYNIPDGLD EDDLMGELDA LEADMGNETE ADGMPSYLQP DTETDYDSEL
201: NLPAAPTGHN GAPHGRAQAE DEFGLPAVPR ASLRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)