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AT3G10610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal S17 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal S17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: Ribosomal S17 family protein (TAIR:AT2G05220.2); Has 1007 Blast hits to 1007 proteins in 350 species: Archae - 195; Bacteria - 0; Metazoa - 361; Fungi - 145; Plants - 127; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1383eggNOG:KOG0187EMBL:AC011560EMBL:AC013428
EMBL:AY063881EMBL:AY088250EMBL:AY091313EMBL:CP002686
EnsemblPlants:AT3G10610EnsemblPlants:AT3G10610.1entrez:820230Gene3D:1.10.60.20
GeneID:820230Genevisible:Q9SQZ1GO:GO:0003735GO:GO:0006412
GO:GO:0022626GO:GO:0022627Gramene:AT3G10610.1HAMAP:MF_00511
hmmpanther:PTHR10732HOGENOM:HOG000227166InParanoid:Q9SQZ1InterPro:IPR001210
InterPro:IPR018273KEGG:ath:AT3G10610KO:K02962OMA:THPMRRI
PANTHER:PTHR10732PaxDb:Q9SQZ1Pfam:PF00833Pfam:Q9SQZ1
PhylomeDB:Q9SQZ1PRIDE:Q9SQZ1PRO:PR:Q9SQZ1PROSITE:PS00712
ProteinModelPortal:Q9SQZ1Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_187672.1scanprosite:PS00712
SMR:Q9SQZ1STRING:3702.AT3G10610.1SUPFAM:0049231SUPFAM:SSF116820
TAIR:AT3G10610UniGene:At.27157UniGene:At.75594UniProt:Q9SQZ1
Coordinates (TAIR10) chr3:+:3319459..3319881
Molecular Weight (calculated) 16036.70 Da
IEP (calculated) 10.72
GRAVY (calculated) -0.57
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKIDDVKVDK
101: ETLEMLASLG MSDIAGISQV ETQQAMAPAV FGRPAGRYQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)