suba logo
AT3G10590.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Duplicated homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT4G09450.1); Has 905 Blast hits to 899 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 806; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
Protein Annotations
EMBL:AC011560EMBL:AC013428EMBL:AY550300EMBL:CP002686
EMBL:DQ446652EnsemblPlants:AT3G10590EnsemblPlants:AT3G10590.1entrez:820227
Gene3D:1.10.10.60GeneID:820227GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351Gramene:AT3G10590.1hmmpanther:PTHR12374
hmmpanther:PTHR12374:SF25InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057
InterPro:IPR017884InterPro:IPR017930KEGG:ath:AT3G10590OMA:YEKMAND
Pfam:PF00249Pfscan:PS51293Pfscan:PS51294PhylomeDB:Q9SQY9
PROSITE:PS51293PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_187670.1
SMART:SM00717SMR:Q9SQY9STRING:3702.AT3G10590.1SUPFAM:SSF46689
TAIR:AT3G10590TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.50167
UniProt:Q9SQY9
Coordinates (TAIR10) chr3:-:3310424..3311311
Molecular Weight (calculated) 23934.00 Da
IEP (calculated) 8.37
GRAVY (calculated) -1.24
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSPRWTED DNRRFKSALS QFPPDNKRLV NVAQHLPKPL EEVKYYYEKL VNDVYLPKPL ENVTQHLQKP MEMEEMKYMY EKMANDVNQM PEYVPLAESS
101: QSKRRKKDTP NPWTEEEHRL FLQGLKKYGE GASTLTSTNF VKTKTPRQVS SHAQYYKRQK SDNKKEKRRS IFDITLESTE GNPDSGNQNP PDDDDPSQGQ
201: GTCLGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)