AT3G10560.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 0.988 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Cytochrome P450 superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
member of CYP77A | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
UNFERTILIZED EMBRYO SAC 9 (UNE9); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: double fertilization forming a zygote and endosperm, pollen tube development; LOCATED IN: endomembrane system; EXPRESSED IN: central cell, embryo, sperm cell, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 77, subfamily A, polypeptide 9 (TAIR:AT5G04630.1); Has 33598 Blast hits to 33350 proteins in 1733 species: Archae - 49; Bacteria - 4240; Metazoa - 11965; Fungi - 6662; Plants - 9437; Viruses - 6; Other Eukaryotes - 1239 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:3299939..3301483 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 58051.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.02 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 514 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSFLSFSPIS LDLLSSNVFL TILAIIISGL LKTITYRKHN SNHLNLPPGP PGWPVIGNLF QFTRSGKQFF EYVEDLVKIY GPILTLRLGT RTMIIISDAS 101: LAHEALIERG AQFATRPVET PTRKIFSSSE ITVHSAMYGP VWRSLRRNMV QNMLSSNRLK EFGSVRKSAM DKLIERIKSE ARDNDGLVWV LQNSRYAAFC 201: VLLDICFGVE MEEESIEKMD QLMTAILNAV DPKLHDYLPI LTPFNYNERN RALKLRRELV DFVVGFIEKR RKAIRTATVS SFSYLDTLFD LRIIEGSETT 301: PSDEDLVTLC SEFLNAGTDT TGAAIEWGIA ELIANPEIQS RLYDEIKSTV GDRAVDERDV DKMVLLQAVV KEILRRHPPT YFTLSHGVTE PTTLSGYNIP 401: VGVNIEFYLP GISEDPKIWS EPKKFDPDRF LSGREDADIT GVAGVKMMPF GVGRRICPGM GMATVHVHLM IARMVQEFEW LAYPPQSEMD FAGKLVFAVV 501: MKKPLRAMVR PRVQ |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)