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AT3G10470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C2H2-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT5G04390.1); Has 2638 Blast hits to 2271 proteins in 138 species: Archae - 0; Bacteria - 4; Metazoa - 609; Fungi - 41; Plants - 1007; Viruses - 0; Other Eukaryotes - 977 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5048eggNOG:KOG1721EMBL:AB493608EMBL:AC011560EMBL:AC013428EMBL:CP002686EnsemblPlants:AT3G10470
EnsemblPlants:AT3G10470.1entrez:820211GeneID:820211GO:GO:0003700GO:GO:0006355GO:GO:0009555GO:GO:0046872
Gramene:AT3G10470.1hmmpanther:PTHR26374hmmpanther:PTHR26374:SF182HOGENOM:HOG000238452InterPro:IPR007087InterPro:IPR015880KEGG:ath:AT3G10470
ncoils:CoilOMA:FASKQEHPfam:PF13912Pfscan:PS50157PhylomeDB:Q7G8T1PROSITE:PS00028PROSITE:PS50157
Proteomes:UP000006548RefSeq:NP_187658.1scanprosite:PS00028SMART:SM00355SMR:Q7G8T1STRING:3702.AT3G10470.1SUPFAM:SSF57667
TAIR:AT3G10470UniGene:At.39920UniProt:Q7G8T1
Coordinates (TAIR10) chr3:+:3260424..3261620
Molecular Weight (calculated) 42995.80 Da
IEP (calculated) 7.95
GRAVY (calculated) -0.75
Length 398 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAAAEAVSA AREQSLILKG KRTKRQRPQS PIPFSIIPPM SSHEPDAEEE STSLVSKEKS LNDEINNNNI KNNNNTLING VTSSSSASSS SNNNATLKAT
101: ADEEDQDMAN CLILLAQGHS LPHLQPQPHP QQQTRQLMMS YQDSGNNNNN AYRSSSRRFL ETSSSNGTTT NGGGGRAGYY VYQCKTCDRT FPSFQALGGH
201: RASHKKPKAA MGLHSNHDHK KSNYDDAVSL HLNNVLTTTP NNNSNHRSLV VYGKGSNNKV HECGICGAEF TSGQALGGHM RRHRGAVVAA AAASTATVSV
301: AAIPATANTA LSLSPMSFDQ MSEGPIQAPV KRARSAVVSL DLDLNLPAPE DENRVNGLSF ASKQEHEQEH EQTQQKKQRE EQKSLVLSSA PTLVDCHY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)