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AT3G10340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.497
cytosol 0.225
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phenylalanine ammonia-lyase 4
Curator
Summary (TAIR10)
Encodes PAL4, a putative a phenylalanine ammonia-lyase. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
Computational
Description (TAIR10)
phenylalanine ammonia-lyase 4 (PAL4); FUNCTIONS IN: ammonia-lyase activity, catalytic activity; INVOLVED IN: L-phenylalanine catabolic process, biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: PHE ammonia lyase 1 (TAIR:AT2G37040.1); Has 4898 Blast hits to 4876 proteins in 1415 species: Archae - 40; Bacteria - 2975; Metazoa - 80; Fungi - 127; Plants - 1177; Viruses - 0; Other Eukaryotes - 499 (source: NCBI BLink).
Protein Annotations
BioGrid:5530BRENDA:4.3.1.24EC:4.3.1.24eggNOG:COG2986
eggNOG:KOG0222EMBL:AC009400EMBL:AY099657EMBL:AY303130
EMBL:BT000252EMBL:CP002686EnsemblPlants:AT3G10340EnsemblPlants:AT3G10340.1
entrez:820196Gene3D:1.10.274.20Gene3D:1.10.275.10GeneID:820196
Genevisible:Q9SS45GO:GO:0005737GO:GO:0006559GO:GO:0009800
GO:GO:0045548Gramene:AT3G10340.1gramene_pathway:4.3.1.24gramene_pathway:PWY-1121
gramene_pathway:PWY-6444gramene_pathway:PWY-6457gramene_pathway:PWY1F-467gramene_plant_reactome:1119582
gramene_plant_reactome:6875580hmmpanther:PTHR10362hmmpanther:PTHR10362:SF19HOGENOM:HOG000214384
InParanoid:Q9SS45IntAct:Q9SS45InterPro:IPR001106InterPro:IPR005922
InterPro:IPR008948InterPro:IPR022313InterPro:IPR023144InterPro:IPR024083
KEGG:00360+4.3.1.24KEGG:00940+4.3.1.24KEGG:ath:AT3G10340KO:K10775
ncoils:CoilOMA:FSAMCAGPaxDb:Q9SS45Pfam:PF00221
Pfam:Q9SS45PhylomeDB:Q9SS45PRIDE:Q9SS45PRO:PR:Q9SS45
PROSITE:PS00488ProteinModelPortal:Q9SS45Proteomes:UP000006548Reactome:R-ATH-70921
RefSeq:NP_187645.1SABIO-RK:Q9SS45scanprosite:PS00488SMR:Q9SS45
STRING:3702.AT3G10340.1SUPFAM:SSF48557TAIR:AT3G10340tair10-symbols:PAL4
TIGRfam:TIGR01226TIGRFAMs:TIGR01226UniGene:At.18429UniGene:At.67148
UniPathway:UPA00713UniProt:Q9SS45
Coordinates (TAIR10) chr3:+:3204260..3207809
Molecular Weight (calculated) 76924.10 Da
IEP (calculated) 6.22
GRAVY (calculated) -0.17
Length 707 amino acids
Sequence (TAIR10)
(BLAST)
001: MELCNQNNHI TAVSGDPLNW NATAEALKGS HLDEVKRMVK EYRKEAVKLG GETLTIGQVA AVARGGGGST VELAEEARAG VKASSEWVME SMNRGTDSYG
101: VTTGFGATSH RRTKQGGALQ NELIRFLNAG IFGPGAGDTS HTLPKPTTRA AMLVRVNTLL QGYSGIRFEI LEAITKLLNH EITPCLPLRG TITASGDLVP
201: LSYIAGLLTG RPNSKAVGPS GETLTASEAF KLAGVSSFFE LQPKEGLALV NGTAVGSGLA STVLFDANIL AVLSEVMSAM FAEVMQGKPE FTDHLTHKLK
301: HHPGQIEAAA IMEHILDGSS YVKEAQLLHE MDPLQKPKQD RYALRTSPQW LGPQIEVIRA ATKMIEREIN SVNDNPLIDV SRNKALHGGN FQGTPIGVAM
401: DNSRLAIASI GKLMFAQFSE LVNDFYNNGL PSNLSGGRNP SLDYGFKGAE IAMASYCSEL QFLANPVTNH VQSAEQHNQD VNSLGLISSR KTAEAVDILK
501: LMSTTYLVAL CQAVDLRHLE ENLKKAVKSA VSQVAKRVLT VGANGELHPS RFTERDVLQV VDREYVFSYA DDPCSLTYPL MQKLRHILVD HALADPEREA
601: NSATSVFHKI GAFEAELKLL LPKEVERVRV EYEEGTSAIA NRIKECRSYP LYRFVRDELN TELLTGENVR SPGEEFDKVF LAISDGKLID PLLECLKEWN
701: GAPVSIC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)