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AT3G10330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cyclin-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cyclin-like family protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation, regulation of transcription; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Zinc finger, TFIIB-type (InterPro:IPR013137), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: transcription factor IIB (TAIR:AT2G41630.1); Has 1989 Blast hits to 1976 proteins in 358 species: Archae - 539; Bacteria - 1; Metazoa - 303; Fungi - 308; Plants - 195; Viruses - 12; Other Eukaryotes - 631 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1405eggNOG:KOG1597EMBL:AC009400EMBL:AY050421
EMBL:AY060526EMBL:AY087850EMBL:CP002686EMBL:Z34661
EnsemblPlants:AT3G10330EnsemblPlants:AT3G10330.1entrez:820195ExpressionAtlas:Q9SS44
Gene3D:1.10.472.10GeneID:820195Genevisible:Q9SS44GO:GO:0005634
GO:GO:0005737GO:GO:0006352GO:GO:0006355GO:GO:0008270
Gramene:AT3G10330.1hmmpanther:PTHR11618hmmpanther:PTHR11618:SF27HOGENOM:HOG000108634
InParanoid:Q9SS44InterPro:IPR000812InterPro:IPR013137InterPro:IPR013150
InterPro:IPR013763InterPro:IPR023486KEGG:ath:AT3G10330KO:K03124
OMA:KMPRPLDPANTHER:PTHR11618PaxDb:Q9SS44Pfam:PF00382
Pfam:PF08271Pfam:Q9SS44Pfscan:PS51134PhylomeDB:Q9SS44
PRIDE:Q9SS44PRINTS:PR00685PRO:PR:Q9SS44PROSITE:PS00782
PROSITE:PS51134ProteinModelPortal:Q9SS44Proteomes:UP000006548Reactome:R-ATH-674695
Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042
RefSeq:NP_187644.1scanprosite:PS00782SMART:SM00385SMR:Q9SS44
STRING:3702.AT3G10330.1SUPFAM:SSF47954SUPFAM:SSF57783TAIR:AT3G10330
UniGene:At.199UniProt:Q53YT9UniProt:Q9SS44
Coordinates (TAIR10) chr3:+:3199907..3201642
Molecular Weight (calculated) 34223.50 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.41
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDAFCSDCK RHTEVVFDHS AGDTVCSECG LVLESHSIDE TSEWRTFANE SGDNDPVRVG GPTNPLLADG GLTTVISKPN GSSGDFLSSS LGRWQNRGSN
101: PDRGLIVAFK TIATMADRLG LVATIKDRAN EIYKRVEDQK SSRGRNQDAL LAACLYIACR QEDKPRTVKE ICSVANGATK KEIGRAKEYI VKQLGLETGQ
201: LVEMGTIHAG DFMRRFCSNL GMTNQTVKAA QESVQKSEEF DIRRSPISIA AAVIYIITQL SDEKKPLRDI SVATGVAEGT IRNSYKDLYP HLSKIIPAWY
301: AKEEDLKNLQ SP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)