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AT3G10260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Reticulon family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Reticulon family protein; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT3G61560.1); Has 1060 Blast hits to 1060 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 591; Fungi - 0; Plants - 458; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioGrid:5522eggNOG:ENOG410XPKHeggNOG:KOG1792EMBL:AC009400EMBL:AY045830EMBL:AY085435EMBL:AY091368
EMBL:CP002686EnsemblPlants:AT3G10260EnsemblPlants:AT3G10260.1EnsemblPlants:AT3G10260.2EnsemblPlants:AT3G10260.3entrez:820188GeneID:820188
Genevisible:Q9SS37GO:GO:0005739GO:GO:0005789GO:GO:0016021hmmpanther:PTHR10994hmmpanther:PTHR10994:SF62HOGENOM:HOG000237479
InParanoid:Q9SS37IntAct:Q9SS37InterPro:IPR003388iPTMnet:Q9SS37KEGG:ath:AT3G10260OMA:LGMIAQFPaxDb:Q9SS37
Pfam:PF02453Pfam:Q9SS37Pfscan:PS50845PhylomeDB:Q9SS37PRIDE:Q9SS37PRO:PR:Q9SS37PROSITE:PS50845
ProteinModelPortal:Q9SS37Proteomes:UP000006548RefSeq:NP_566371.1RefSeq:NP_850551.1RefSeq:NP_850552.1STRING:3702.AT3G10260.3TAIR:AT3G10260
TMHMM:TMhelixUniGene:At.21990UniProt:Q9SS37
Coordinates (TAIR10) chr3:-:3171413..3172508
Molecular Weight (calculated) 27914.10 Da
IEP (calculated) 8.90
GRAVY (calculated) 0.13
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)