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AT3G10250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein 1589 of unknown function
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT5G04090.2); Has 239 Blast hits to 239 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH1JeggNOG:ENOG410YEUNEMBL:AK317093EMBL:AY054259
EMBL:AY079118EMBL:AY084385EMBL:CP002686EnsemblPlants:AT3G10250
EnsemblPlants:AT3G10250.1EnsemblPlants:AT3G10250.2entrez:820187GeneID:820187
Gramene:AT3G10250.1Gramene:AT3G10250.2hmmpanther:PTHR31871hmmpanther:PTHR31871:SF1
InterPro:IPR006476KEGG:ath:AT3G10250OMA:QEINGWIPfam:PF09713
PhylomeDB:Q940M5Proteomes:UP000006548RefSeq:NP_566370.1RefSeq:NP_974271.1
STRING:3702.AT3G10250.1TAIR:AT3G10250TIGRfam:TIGR01589TIGRFAMs:TIGR01589
UniGene:At.18434UniProt:Q940M5
Coordinates (TAIR10) chr3:-:3168371..3170418
Molecular Weight (calculated) 36380.50 Da
IEP (calculated) 4.95
GRAVY (calculated) -0.61
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSGTVRRVS RQDIQLVQNL IERCLQLYMN QKEVVDTLLE QAKIEPGFTE LVWQKLEEEN REFFKAYYLR LMVKHQIMEF NKLLEQQVHH MRQMHPTGVA
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)