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AT3G10090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21166475 (2011): cytosol
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nucleic acid-binding, OB-fold-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G03850.1); Has 1066 Blast hits to 1066 proteins in 391 species: Archae - 235; Bacteria - 0; Metazoa - 333; Fungi - 148; Plants - 161; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).
Protein Annotations
BioGrid:16968DNASU:820170eggNOG:COG2053eggNOG:KOG3502
EMBL:AB005235EMBL:AC010927EMBL:AL162873EMBL:AY128400
EMBL:BT000086EMBL:BT010782EMBL:BT011253EMBL:BT025696
EMBL:CP002686EMBL:CP002688EnsemblPlants:AT3G10090EnsemblPlants:AT3G10090.1
EnsemblPlants:AT5G03850.1entrez:820170entrez:831692Gene3D:2.40.50.140
GeneID:820170GeneID:831692Genevisible:Q9SR73GO:GO:0003735
GO:GO:0005618GO:GO:0005829GO:GO:0005886GO:GO:0006412
GO:GO:0022626GO:GO:0022627Gramene:AT3G10090.1Gramene:AT5G03850.1
HAMAP:MF_00292hmmpanther:PTHR10769InParanoid:Q9SR73IntAct:Q9SR73
InterPro:IPR000289InterPro:IPR012340InterPro:IPR028626KEGG:ath:AT3G10090
KEGG:ath:AT5G03850KO:K02979ncoils:CoilOMA:ILMLMET
PANTHER:PTHR10769PaxDb:Q9SR73Pfam:PF01200Pfam:Q9SR73
PhylomeDB:Q9SR73PIR:T48412PRIDE:Q9SR73PRO:PR:Q9SR73
ProDom:PD005541PROSITE:PS00961ProteinModelPortal:Q9SR73Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695
Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_187620.1RefSeq:NP_196005.1scanprosite:PS00961SMR:Q9SR73
STRING:3702.AT5G03850.1SUPFAM:SSF50249TAIR:AT3G10090TAIR:AT5G03850
UniGene:At.27764UniGene:At.39990UniProt:Q9SR73
Coordinates (TAIR10) chr3:-:3108960..3109154
Molecular Weight (calculated) 7371.04 Da
IEP (calculated) 11.44
GRAVY (calculated) -0.60
Length 64 amino acids
Sequence (TAIR10)
(BLAST)
1: MDSQIKHAVV VKVMGRTGSR GQVTQVRVKF TDSDRYIMRN VKGPVREGDI LTLLESEREA RRLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)