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AT3G10070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TBP-associated factor 12
Curator
Summary (TAIR10)
Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12.
Computational
Description (TAIR10)
TBP-associated factor 12 (TAF12); FUNCTIONS IN: DNA binding, transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: chloroplast, transcription factor TFIID complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: Transcription initiation factor TFIID subunit A (TAIR:AT1G17440.2); Has 50598 Blast hits to 32470 proteins in 1374 species: Archae - 31; Bacteria - 3770; Metazoa - 21452; Fungi - 11498; Plants - 4385; Viruses - 864; Other Eukaryotes - 8598 (source: NCBI BLink).
Protein Annotations
BioGrid:5502eggNOG:COG5624eggNOG:KOG1142EMBL:AC010927
EMBL:AF344878EMBL:AK221690EMBL:AY463613EMBL:CP002686
EnsemblPlants:AT3G10070EnsemblPlants:AT3G10070.1entrez:820168Gene3D:1.10.20.10
GeneID:820168Genevisible:Q9SR71GO:GO:0005669GO:GO:0006352
GO:GO:0006355Gramene:AT3G10070.1hmmpanther:PTHR12264hmmpanther:PTHR12264:SF21
HOGENOM:HOG000153525InParanoid:Q9SR71IntAct:Q9SR71InterPro:IPR003228
InterPro:IPR009072KEGG:ath:AT3G10070KO:K03126OMA:PWQQHSS
PaxDb:Q9SR71Pfam:PF03847Pfam:Q9SR71PhylomeDB:Q9SR71
PRIDE:Q9SR71PRO:PR:Q9SR71ProDom:PD012998ProteinModelPortal:Q9SR71
Proteomes:UP000006548Reactome:R-ATH-674695Reactome:R-ATH-73776Reactome:R-ATH-73779
Reactome:R-ATH-75953Reactome:R-ATH-76042RefSeq:NP_566367.1SMR:Q9SR71
STRING:3702.AT3G10070.1SUPFAM:SSF47113TAIR:AT3G10070tair10-symbols:TAF12
tair10-symbols:TAFII58UniGene:At.23399UniGene:At.39997UniGene:At.75030
UniProt:Q9SR71
Coordinates (TAIR10) chr3:-:3104195..3106798
Molecular Weight (calculated) 57713.10 Da
IEP (calculated) 10.42
GRAVY (calculated) -0.84
Length 539 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)