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AT3G09850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D111/G-patch domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT1G17070.1); Has 4043 Blast hits to 2784 proteins in 353 species: Archae - 19; Bacteria - 864; Metazoa - 1783; Fungi - 478; Plants - 347; Viruses - 9; Other Eukaryotes - 543 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP4YeggNOG:KOG2184EMBL:AC015985EMBL:AY057497
EMBL:BT000646EMBL:CP002686EnsemblPlants:AT3G09850EnsemblPlants:AT3G09850.1
entrez:820143GeneID:820143GO:GO:0003676Gramene:AT3G09850.1
hmmpanther:PTHR23329hmmpanther:PTHR23329:SF9HOGENOM:HOG000077730InterPro:IPR000467
KEGG:ath:AT3G09850KO:K17569OMA:FEMHTKGPfam:PF01424
Pfam:PF01585Pfscan:PS50174PhylomeDB:Q9SF87PROSITE:PS50174
Proteomes:UP000006548RefSeq:NP_566359.1SMART:SM00443STRING:3702.AT3G09850.1
TAIR:AT3G09850UniGene:At.18729UniProt:Q9SF87
Coordinates (TAIR10) chr3:-:3023397..3025742
Molecular Weight (calculated) 84226.30 Da
IEP (calculated) 8.57
GRAVY (calculated) -0.91
Length 781 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGGGRRRSN GGGSSGKNKA KSPGQSTRTN HNSAAGSSSG GRHRRQNNTT LFVEGGILSD YRKDPNFSTP SRGGSSSGKG LRSRSIERVK ASASTSGPRK
101: CSGNTYVYQY PSIDFEEGLD RRSGVESDQM NESPLVLGKS EATQIVAFLD QTPSSSKGIK VSYDYEYEPS YVLGDDSHKG LGFCDDSDAT PSGSLSIPKA
201: LGDQGGSFSH EEEGDAVDES GGNDDELMPD VVKTPKRRNS GFISIGGMKL YTEDVSGEES DGEEEMNDDD DDESGDEGSS GSSELSESDS SEDMFGSYSE
301: IDDDVAKDYL EGIGGSEIML DAHWLAEQSL DKLDLSSDDS SSSDSSDRKT RKLTGIRLQK ASMEYGKKKT TRSGYSGHGK STNPLAMDDL MFVKDPRSLS
401: GKKNKKKEVA KFPQSWPSRA PKSKNSRSFP GENKKHRKEY IALKRRERML QRGVDLADIN SQLENFVLEN VDMHCFQRMH NRDCSQVRRL ADVYRLSSSC
501: NGSGKKSFVT VTRTYQTCMP SASDKLRIEK LIGAGDEDCD FAVSGGVKGK SGSLDRKKAK DSAKKRPTRE ERERNKSNGK KSSYADQPVS FVSSGIIDSE
601: IAVAKTSVEK VAKEVAETTP GTSNGADIGA FEVHTRGFGS KMMAKMGFID GGGLGKDGKG IAQPIEAVQR PKSLGLGLDF SIDTEDPSPS SNNNNNAKRN
701: RSSSSGKHGK RITHDNGASG SGRIRDKRLG AFEQHTTGFG SRMMARMGFV EGSGLGRESQ GIVNPLVAVR RPRARGIGAE G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)