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AT3G09770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G03200.1); Has 9681 Blast hits to 6810 proteins in 512 species: Archae - 8; Bacteria - 442; Metazoa - 3215; Fungi - 970; Plants - 3369; Viruses - 475; Other Eukaryotes - 1202 (source: NCBI BLink).
Protein Annotations
BioGrid:5469EC:6.3.2.-eggNOG:ENOG410XRAEeggNOG:KOG4265EMBL:AC015985EMBL:AC016661EMBL:AY074275
EMBL:AY087831EMBL:CP002686EnsemblPlants:AT3G09770EnsemblPlants:AT3G09770.1entrez:820135ExpressionAtlas:Q9S752Gene3D:3.30.40.10
GeneID:820135Genevisible:Q9S752GO:GO:0004842GO:GO:0005886GO:GO:0008270GO:GO:0009737GO:GO:0016874
GO:GO:0080144GO:GO:1901527hmmpanther:PTHR22996HOGENOM:HOG000239918InParanoid:Q9S752IntAct:Q9S752InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT3G09770OMA:AGERESDPaxDb:Q9S752Pfam:PF13920Pfam:Q9S752Pfscan:PS50089
PhylomeDB:Q9S752PRIDE:Q9S752PRO:PR:Q9S752PROSITE:PS50089ProteinModelPortal:Q9S752Proteomes:UP000006548RefSeq:NP_566356.1
SMART:SM00184SMR:Q9S752STRING:3702.AT3G09770.1SUPFAM:SSF57850TAIR:AT3G09770UniGene:At.22524UniPathway:UPA00143
UniProt:Q9S752
Coordinates (TAIR10) chr3:-:2996402..2997835
Molecular Weight (calculated) 42850.40 Da
IEP (calculated) 6.15
GRAVY (calculated) -0.65
Length 388 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)