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AT3G09760.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G03180.2); Has 1083 Blast hits to 1078 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 334; Fungi - 71; Plants - 602; Viruses - 25; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:AY054231EMBL:AY113176
EMBL:CP002686EMBL:DQ059112EnsemblPlants:AT3G09760EnsemblPlants:AT3G09760.1
entrez:820134Gene3D:3.30.40.10GeneID:820134GO:GO:0008270
GO:GO:0016021Gramene:AT3G09760.1hmmpanther:PTHR23012hmmpanther:PTHR23012:SF92
HOGENOM:HOG000240594InterPro:IPR011016InterPro:IPR013083InterPro:IPR033275
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT3G09760
OMA:VRRRYVWPANTHER:PTHR23012Pfam:PF12906Pfscan:PS51292
PhylomeDB:Q940P1PROSITE:PS51292Proteomes:UP000006548RefSeq:NP_566355.1
SMART:SM00744SMR:Q940P1STRING:3702.AT3G09760.1SUPFAM:SSF57850
TAIR:AT3G09760TMHMM:TMhelixUniGene:At.26390UniGene:At.66500
unipathway:UPA00143UniProt:Q940P1
Coordinates (TAIR10) chr3:-:2992975..2995451
Molecular Weight (calculated) 54130.60 Da
IEP (calculated) 8.81
GRAVY (calculated) -0.32
Length 491 amino acids
Sequence (TAIR10)
(BLAST)
001: MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)