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AT3G09740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23515225 (2013): cytosol cell plate
  • PMID:23515225 (2013): endoplasmic reticulum endoplasmic reticulum membrane
  • PMID:23515225 (2013): plasma membrane
  • PMID:18827404 (2008): endoplasmic reticulum
  • PMID:18827404 (2008): Golgi trans-Golgi network
  • PMID:18827404 (2008): plasma membrane
  • PMID:15342965 (2004): endoplasmic reticulum
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26748395 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15060130 (2004): plasma membrane
  • PMID:14517339 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : syntaxin of plants 71
Curator
Summary (TAIR10)
syntaxin of plants 71 (SYP71)
Computational
Description (TAIR10)
syntaxin of plants 71 (SYP71); FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, protein targeting to membrane; LOCATED IN: integral to membrane, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 72 (TAIR:AT3G45280.1); Has 541 Blast hits to 539 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 116; Plants - 188; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIQ9eggNOG:ENOG410XS1REMBL:BT024483EnsemblPlants:AT3G09740EnsemblPlants:AT3G09740.1entrez:820132ExpressionAtlas:Q2HIU8
GeneID:820132GO:GO:0005622GO:GO:0006886GO:GO:0016021GO:GO:0061025Gramene:AT3G09740.1hmmpanther:PTHR19957
hmmpanther:PTHR19957:SF129InParanoid:Q9SF29InterPro:IPR000727InterPro:IPR006012iPTMnet:Q2HIU8KEGG:ath:AT3G09740KO:K08506
ncoils:CoilOMA:RNDLVHAPaxDb:Q2HIU8Pfam:PF05739Pfam:Q9SF29Pfscan:PS50192PhylomeDB:Q2HIU8
PRIDE:Q2HIU8PROSITE:PS00914PROSITE:PS50192ProteinModelPortal:Q2HIU8RefSeq:NP_566354.1scanprosite:PS00914SMART:SM00397
SMR:Q2HIU8STRING:3702.AT3G09740.1SUPFAM:SSF58038TAIR:AT3G09740tair10-symbols:ATSYP71tair10-symbols:SYP71TMHMM:TMhelix
UniGene:At.20899UniGene:At.66500UniProt:Q2HIU8UniProt:Q9SF29
Coordinates (TAIR10) chr3:+:2989615..2991354
Molecular Weight (calculated) 29984.60 Da
IEP (calculated) 4.83
GRAVY (calculated) -0.52
Length 266 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)